| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is dan [H]
Identifier: 91781787
GI number: 91781787
Start: 446992
End: 448473
Strand: Direct
Name: dan [H]
Synonym: Bxe_A4058
Alternate gene names: 91781787
Gene position: 446992-448473 (Clockwise)
Preceding gene: 91781786
Following gene: 91781788
Centisome position: 9.13
GC content: 66.67
Gene sequence:
>1482_bases ATGCATTCGCATCCCGAAGCCGCCGATACGCTGATCTTCGGCGCGCAACTGTACGACGGCACGGGCGCGCCGCCGGTCGA GCGCGATGTCGCGGTGCGTGACGGCCGCATCGTCGCGATCGGCAATCTGTCGAACTGGCTGGCCGAAGAGGTGATCGAGG CCGAAGGCCGCGCGCTGGCGCCGGGCTTCATCGACGTTCATACGCACGACGACACGCACGTGATCCGCTCGCCGCAAATG CTGCCGAAGATCACGCAAGGCGTGACGACGGTGATTGTCGGCAATTGCGGCATCAGCGCGTCGCCGGTTGCGCTCAGGGG CGAGCCGCCCGATCCGATGAACCTGCTCGGCGAGCGCGACGCGTTCCAGTATCCGACCTTCGCCGCGTATGTCGCAGCGG TCAATGCGGCGCGGCCAGCGGTGAACGTCGGCGCGCTGATCGGACATACGGCGTTGCGCAGCAACCAGATGGACCGGCTC GATCGCGCGGCGACCGGGCAGGAAATCGAAGCCATGCGCGCTCAACTCGAAGAAGCATTGGCCAACGGCGCGCTGGGTTT GAGCTCGGGGCTTGCCTACGGCTCGGCGTTCGCCGCGCCGGCCGAAGAAGTGATGGCGCTGGCTGAACCGCTCGCCGCCG CCGGCGCGCTGTACACCACGCATATGCGCACCGAGTTCGACGCGATTCTCGACGCAATGGAAGAAGCGTATCGCGTGGGC CGTCATGCGCACGTGCCGGTGGTGATTTCGCATCTGAAGTGCGCTGGGCCGTCGAACTGGGGCCGCAGCGAAGAAGTGCT GAAGTCGCTGGAAGGCGCGCGCCGCCTGCAGCCGGTCGGTTGCGATTGCTATCCATACAACCGCAGTTCGTCGACGCTCG ATCTGAAGCAGGTGACGGGCGATATCGACATCACGATTACGTGGTCGGAGCCGCATCCGGAGATGGCGGGCAAGCTCGTG AAGGAGATTGCCGCGGAGTGGGGCGTCACGCAGCAGGAAGCGGGCAAGCGCCTGCAACCGGCGGGCGCGGTGTATCACAA CATGTCCGAAGACGACGTGCGGCGCATTCTCTCGCATCCCGCGACGATGGTCGGCTCGGACGGTTTGCCGAACGATCCGC TGCCGCATCCGCGCTTGTGGGGCGCATTTCCGCGCGTGCTTGGCCACTATGCGCGCGACGCGGGCTTGCTGCCGCTCGAA GAAGCGGTGCGCAAGATGACCAGCCTGTCGGCGCGGCGCTTTGGTCTGGCGCAGCGTGGCGAGGTGCATATCGGCTATCA CGCCGATCTGGTGCTGTTCGACCCGGCCAGAGTGCGCGATGCGGCGACGTTCGAAAAACCGCAGCAGGCCGCCGACGGTA TCGACGCGGTGTGGGTGAACGGCGTGTTGTCGTACCGCGACGGCGAAGTGATGGGCGAGCGCGCCGGTCACTTCGTGGCG CGTGGCGCGGCGTCGAAGGGCGACGCGCACGGCGCGTTCTGA
Upstream 100 bases:
>100_bases CAGTCAGGGCGACGAGAGCCGCGAACTGCTGCGCCGCATGAAGCATGCGCTCGACACGCACCGCGGCGGCGGCGATCGAC AACCGTTAGGAGACTGATCC
Downstream 100 bases:
>100_bases ATTTTTGATCGATTGATTGCGGCGCGCGGGGCGATTCTGCCGAACGCGCGTCGGACTATTCAAGGAGTGTAGTGATGAAA CGATATGGTGTTGAAGGCGG
Product: N-acyl-D-amino-acid deacylase
Products: NA
Alternate protein names: N-acyl-D-amino-acid deacylase [H]
Number of amino acids: Translated: 493; Mature: 493
Protein sequence:
>493_residues MHSHPEAADTLIFGAQLYDGTGAPPVERDVAVRDGRIVAIGNLSNWLAEEVIEAEGRALAPGFIDVHTHDDTHVIRSPQM LPKITQGVTTVIVGNCGISASPVALRGEPPDPMNLLGERDAFQYPTFAAYVAAVNAARPAVNVGALIGHTALRSNQMDRL DRAATGQEIEAMRAQLEEALANGALGLSSGLAYGSAFAAPAEEVMALAEPLAAAGALYTTHMRTEFDAILDAMEEAYRVG RHAHVPVVISHLKCAGPSNWGRSEEVLKSLEGARRLQPVGCDCYPYNRSSSTLDLKQVTGDIDITITWSEPHPEMAGKLV KEIAAEWGVTQQEAGKRLQPAGAVYHNMSEDDVRRILSHPATMVGSDGLPNDPLPHPRLWGAFPRVLGHYARDAGLLPLE EAVRKMTSLSARRFGLAQRGEVHIGYHADLVLFDPARVRDAATFEKPQQAADGIDAVWVNGVLSYRDGEVMGERAGHFVA RGAASKGDAHGAF
Sequences:
>Translated_493_residues MHSHPEAADTLIFGAQLYDGTGAPPVERDVAVRDGRIVAIGNLSNWLAEEVIEAEGRALAPGFIDVHTHDDTHVIRSPQM LPKITQGVTTVIVGNCGISASPVALRGEPPDPMNLLGERDAFQYPTFAAYVAAVNAARPAVNVGALIGHTALRSNQMDRL DRAATGQEIEAMRAQLEEALANGALGLSSGLAYGSAFAAPAEEVMALAEPLAAAGALYTTHMRTEFDAILDAMEEAYRVG RHAHVPVVISHLKCAGPSNWGRSEEVLKSLEGARRLQPVGCDCYPYNRSSSTLDLKQVTGDIDITITWSEPHPEMAGKLV KEIAAEWGVTQQEAGKRLQPAGAVYHNMSEDDVRRILSHPATMVGSDGLPNDPLPHPRLWGAFPRVLGHYARDAGLLPLE EAVRKMTSLSARRFGLAQRGEVHIGYHADLVLFDPARVRDAATFEKPQQAADGIDAVWVNGVLSYRDGEVMGERAGHFVA RGAASKGDAHGAF >Mature_493_residues MHSHPEAADTLIFGAQLYDGTGAPPVERDVAVRDGRIVAIGNLSNWLAEEVIEAEGRALAPGFIDVHTHDDTHVIRSPQM LPKITQGVTTVIVGNCGISASPVALRGEPPDPMNLLGERDAFQYPTFAAYVAAVNAARPAVNVGALIGHTALRSNQMDRL DRAATGQEIEAMRAQLEEALANGALGLSSGLAYGSAFAAPAEEVMALAEPLAAAGALYTTHMRTEFDAILDAMEEAYRVG RHAHVPVVISHLKCAGPSNWGRSEEVLKSLEGARRLQPVGCDCYPYNRSSSTLDLKQVTGDIDITITWSEPHPEMAGKLV KEIAAEWGVTQQEAGKRLQPAGAVYHNMSEDDVRRILSHPATMVGSDGLPNDPLPHPRLWGAFPRVLGHYARDAGLLPLE EAVRKMTSLSARRFGLAQRGEVHIGYHADLVLFDPARVRDAATFEKPQQAADGIDAVWVNGVLSYRDGEVMGERAGHFVA RGAASKGDAHGAF
Specific function: Has a wide specificity; hydrolyzes N-acyl derivative of neutral D-amino acids [H]
COG id: COG3653
COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR023100 - InterPro: IPR012855 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3; PF07908 D-aminoacyl_C [H]
EC number: =3.5.1.81 [H]
Molecular weight: Translated: 52831; Mature: 52831
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSHPEAADTLIFGAQLYDGTGAPPVERDVAVRDGRIVAIGNLSNWLAEEVIEAEGRALA CCCCCCHHHHEEEECEEECCCCCCCCCCCEEEECCEEEEECCHHHHHHHHHHHHCCCEEC PGFIDVHTHDDTHVIRSPQMLPKITQGVTTVIVGNCGISASPVALRGEPPDPMNLLGERD CCEEEEECCCCCCEECCCHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCHHHHCCCCC AFQYPTFAAYVAAVNAARPAVNVGALIGHTALRSNQMDRLDRAATGQEIEAMRAQLEEAL CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHH ANGALGLSSGLAYGSAFAAPAEEVMALAEPLAAAGALYTTHMRTEFDAILDAMEEAYRVG HCCCCCHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RHAHVPVVISHLKCAGPSNWGRSEEVLKSLEGARRLQPVGCDCYPYNRSSSTLDLKQVTG CCCCCHHHEEHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHCCC DIDITITWSEPHPEMAGKLVKEIAAEWGVTQQEAGKRLQPAGAVYHNMSEDDVRRILSHP CEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHCCCCHHHHHHHHHCC ATMVGSDGLPNDPLPHPRLWGAFPRVLGHYARDAGLLPLEEAVRKMTSLSARRFGLAQRG HHECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC EVHIGYHADLVLFDPARVRDAATFEKPQQAADGIDAVWVNGVLSYRDGEVMGERAGHFVA CEEEEEECCEEEECCHHHHHHHHHCCHHHHHCCCCEEECCCEEECCCCHHHHHHHCHHHC RGAASKGDAHGAF CCCCCCCCCCCCC >Mature Secondary Structure MHSHPEAADTLIFGAQLYDGTGAPPVERDVAVRDGRIVAIGNLSNWLAEEVIEAEGRALA CCCCCCHHHHEEEECEEECCCCCCCCCCCEEEECCEEEEECCHHHHHHHHHHHHCCCEEC PGFIDVHTHDDTHVIRSPQMLPKITQGVTTVIVGNCGISASPVALRGEPPDPMNLLGERD CCEEEEECCCCCCEECCCHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCHHHHCCCCC AFQYPTFAAYVAAVNAARPAVNVGALIGHTALRSNQMDRLDRAATGQEIEAMRAQLEEAL CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHH ANGALGLSSGLAYGSAFAAPAEEVMALAEPLAAAGALYTTHMRTEFDAILDAMEEAYRVG HCCCCCHHCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RHAHVPVVISHLKCAGPSNWGRSEEVLKSLEGARRLQPVGCDCYPYNRSSSTLDLKQVTG CCCCCHHHEEHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHCCC DIDITITWSEPHPEMAGKLVKEIAAEWGVTQQEAGKRLQPAGAVYHNMSEDDVRRILSHP CEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHCCCCHHHHHHHHHCC ATMVGSDGLPNDPLPHPRLWGAFPRVLGHYARDAGLLPLEEAVRKMTSLSARRFGLAQRG HHECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC EVHIGYHADLVLFDPARVRDAATFEKPQQAADGIDAVWVNGVLSYRDGEVMGERAGHFVA CEEEEEECCEEEECCHHHHHHHHHCCHHHHHCCCCEEECCCEEECCCCHHHHHHHCHHHC RGAASKGDAHGAF CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8541651 [H]