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The map label for this gene is tdcF [C]

Identifier: 91781788

GI number: 91781788

Start: 448548

End: 448934

Strand: Direct

Name: tdcF [C]

Synonym: Bxe_A4057

Alternate gene names: 91781788

Gene position: 448548-448934 (Clockwise)

Preceding gene: 91781787

Following gene: 91781792

Centisome position: 9.16

GC content: 60.98

Gene sequence:

>387_bases
ATGAAACGATATGGTGTTGAAGGCGGGAAGGGAACGGGCGGTCAGCATATGCCGTTTGCACGTGCGGTCGAAGCCGACGG
CTGGCTGTTCGTGTCGGGCCAGACGCCGATGGAAAACGGCGAAGTGATCAACGGCGGCATCGTCGAGCAGTCGCACAAGG
CGATTCAGAACGTGTTCGCGATTCTGAAGGAGGCCGGCTATGGCGCGGAGCATGTGGTCCGCTGCGGCGTGTGGCTGGAT
GATCCGCGTGACTTCGCGTCGTTCAACAAGGTGTTCCGCGAGTACTTCGGCGAGAACCCGCCGGCGCGCGCCTGCGTGGT
TTCTTCGATGGTGATCGATTGCCGCGTCGAAGTGGACTGCGTGGCTTATAAGAAGCCCACGGCCTAA

Upstream 100 bases:

>100_bases
AGGGCGACGCGCACGGCGCGTTCTGAATTTTTGATCGATTGATTGCGGCGCGCGGGGCGATTCTGCCGAACGCGCGTCGG
ACTATTCAAGGAGTGTAGTG

Downstream 100 bases:

>100_bases
GCCTGCACATTCAGCCGGTTCGTTCGCCGCAAATTCGCATCGACTCGGCGCGGCGAACAACCTGCTTTTCTTACTGCCGC
GCGAGCCGCATATTGTCCGG

Product: YjgF family translation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MKRYGVEGGKGTGGQHMPFARAVEADGWLFVSGQTPMENGEVINGGIVEQSHKAIQNVFAILKEAGYGAEHVVRCGVWLD
DPRDFASFNKVFREYFGENPPARACVVSSMVIDCRVEVDCVAYKKPTA

Sequences:

>Translated_128_residues
MKRYGVEGGKGTGGQHMPFARAVEADGWLFVSGQTPMENGEVINGGIVEQSHKAIQNVFAILKEAGYGAEHVVRCGVWLD
DPRDFASFNKVFREYFGENPPARACVVSSMVIDCRVEVDCVAYKKPTA
>Mature_128_residues
MKRYGVEGGKGTGGQHMPFARAVEADGWLFVSGQTPMENGEVINGGIVEQSHKAIQNVFAILKEAGYGAEHVVRCGVWLD
DPRDFASFNKVFREYFGENPPARACVVSSMVIDCRVEVDCVAYKKPTA

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=112, Percent_Identity=35.7142857142857, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87082213, Length=113, Percent_Identity=30.0884955752212, Blast_Score=66, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71982075, Length=108, Percent_Identity=34.2592592592593, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI25148896, Length=108, Percent_Identity=34.2592592592593, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71982068, Length=108, Percent_Identity=34.2592592592593, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322138, Length=109, Percent_Identity=33.0275229357798, Blast_Score=79, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6320899, Length=105, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=4e-13,
Organism=Drosophila melanogaster, GI19921376, Length=109, Percent_Identity=35.7798165137615, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13999; Mature: 13999

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYGVEGGKGTGGQHMPFARAVEADGWLFVSGQTPMENGEVINGGIVEQSHKAIQNVFA
CCCCCCCCCCCCCCCCCCHHHEECCCCEEEEECCCCCCCCCEEECCCHHHHHHHHHHHHH
ILKEAGYGAEHVVRCGVWLDDPRDFASFNKVFREYFGENPPARACVVSSMVIDCRVEVDC
HHHHCCCCHHHEEEECCEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEEEEEEE
VAYKKPTA
EECCCCCC
>Mature Secondary Structure
MKRYGVEGGKGTGGQHMPFARAVEADGWLFVSGQTPMENGEVINGGIVEQSHKAIQNVFA
CCCCCCCCCCCCCCCCCCHHHEECCCCEEEEECCCCCCCCCEEECCCHHHHHHHHHHHHH
ILKEAGYGAEHVVRCGVWLDDPRDFASFNKVFREYFGENPPARACVVSSMVIDCRVEVDC
HHHHCCCCHHHEEEECCEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEEEEEEE
VAYKKPTA
EECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]