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The map label for this gene is yhjC [C]

Identifier: 91790390

GI number: 91790390

Start: 4824610

End: 4825518

Strand: Reverse

Name: yhjC [C]

Synonym: Bpro_4560

Alternate gene names: 91790390

Gene position: 4825518-4824610 (Counterclockwise)

Preceding gene: 91790394

Following gene: 91790382

Centisome position: 92.79

GC content: 67.55

Gene sequence:

>909_bases
ATGGACCGGATTCAAGCCATTCAACTTTTCATCCGCGTGGTGGACCTCGGCTCGTTCAGCAAGGCCGCGGCCGACGTGGG
CATCGGGCAGCCGTCGGCCACCAAGCTCGTGGCCCAGCTGGAAAAACAGCTGGGGTCCCGCCTGCTGCACCGCTCGACGC
ACGGCGTGACGCCCACCGAAATTGGCGCGCTGTACTACGAAAAATGCAAGCTGATCGCGCACCACATCGAGGAGGCCGAG
ACGGTGGCCGCCCTGCTGCAGTCGCAGGTGCAGGGCGGCTTGCGCATCAGCACGTCGGTCGCCTTCGGCCGGCGCGTGCT
GGTGCCGCTGGTGATGCGCTTCATGAAGCTGCATCCCCAGCTGCAGATCGAGCTGAATTTCGAGGACCGCTACGTCGACC
TGGTCGAGCAGGGCATCGACGTCGCCATCCGCATGGGGCCGCTGGCCGATTCAACGCTGGGCGCCCGTTATCTGGGGGTC
AATCCGTGGGTGCTGGTCGCGTCGCCCGAATACCTTGAAAGGCGTGGCGAGCCGTCGGTTCCGGCGGACCTGGCGGCCCA
CGAGGCCCTGATCTACAGCACCGTGCAGGGCGATGCCCGCTGGCACTTCACGGGGACCGACGGGCTGACGCTGCCGGTGC
CGGTCAAGGGCCCGCTGCGCTCCAACAACCTGTCGGCGCTGCTGGCGGCGGCGCGCGGCGGCATGGGCGTGGCAGCCCTG
CCCCGGTATGTGGCGCACAAATCCATCCGCAGCGGCGTACTGCGGCCGCTGCTGACGGATTGGACGCTGCCCCAGCAGGA
GATCCATGCGGTCTATCCCTCGCCGCAACTGGTGCCCACCAAGGTCAGCGGCTTCGTAGCCTGGCTGCAGGGGCAGTTCG
GGGAAGCCTGGTGGGCTGACGAGCAGTGA

Upstream 100 bases:

>100_bases
CGCCTGCCGCTTGCGCGGAAGCCCCAAGGCATGCATTACGGTTATTCCAGAATGGAATAAAGTCTCCCGAGCAGGGCCTG
GCCGTGGTCTACTTCAGGCC

Downstream 100 bases:

>100_bases
ACAGCGACATGGCGGGGCGCTGACGTGGGGCGGCCGCTTTTGAAAAAGCCCGCTTCGTGCGGGCTTTTTGCTATCTTTTG
AATCGCGCGTTTTGAGCGGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MDRIQAIQLFIRVVDLGSFSKAAADVGIGQPSATKLVAQLEKQLGSRLLHRSTHGVTPTEIGALYYEKCKLIAHHIEEAE
TVAALLQSQVQGGLRISTSVAFGRRVLVPLVMRFMKLHPQLQIELNFEDRYVDLVEQGIDVAIRMGPLADSTLGARYLGV
NPWVLVASPEYLERRGEPSVPADLAAHEALIYSTVQGDARWHFTGTDGLTLPVPVKGPLRSNNLSALLAAARGGMGVAAL
PRYVAHKSIRSGVLRPLLTDWTLPQQEIHAVYPSPQLVPTKVSGFVAWLQGQFGEAWWADEQ

Sequences:

>Translated_302_residues
MDRIQAIQLFIRVVDLGSFSKAAADVGIGQPSATKLVAQLEKQLGSRLLHRSTHGVTPTEIGALYYEKCKLIAHHIEEAE
TVAALLQSQVQGGLRISTSVAFGRRVLVPLVMRFMKLHPQLQIELNFEDRYVDLVEQGIDVAIRMGPLADSTLGARYLGV
NPWVLVASPEYLERRGEPSVPADLAAHEALIYSTVQGDARWHFTGTDGLTLPVPVKGPLRSNNLSALLAAARGGMGVAAL
PRYVAHKSIRSGVLRPLLTDWTLPQQEIHAVYPSPQLVPTKVSGFVAWLQGQFGEAWWADEQ
>Mature_302_residues
MDRIQAIQLFIRVVDLGSFSKAAADVGIGQPSATKLVAQLEKQLGSRLLHRSTHGVTPTEIGALYYEKCKLIAHHIEEAE
TVAALLQSQVQGGLRISTSVAFGRRVLVPLVMRFMKLHPQLQIELNFEDRYVDLVEQGIDVAIRMGPLADSTLGARYLGV
NPWVLVASPEYLERRGEPSVPADLAAHEALIYSTVQGDARWHFTGTDGLTLPVPVKGPLRSNNLSALLAAARGGMGVAAL
PRYVAHKSIRSGVLRPLLTDWTLPQQEIHAVYPSPQLVPTKVSGFVAWLQGQFGEAWWADEQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=32.6599326599327, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=31.1864406779661, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=32.1678321678322, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=29.4520547945205, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=31.5254237288136, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1789440, Length=296, Percent_Identity=30.4054054054054, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=25.5172413793103, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789173, Length=292, Percent_Identity=27.0547945205479, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786448, Length=285, Percent_Identity=25.2631578947368, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=157, Percent_Identity=27.3885350318471, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788706, Length=279, Percent_Identity=22.5806451612903, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788297, Length=247, Percent_Identity=28.3400809716599, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33035; Mature: 33035

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIQAIQLFIRVVDLGSFSKAAADVGIGQPSATKLVAQLEKQLGSRLLHRSTHGVTPTE
CCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
IGALYYEKCKLIAHHIEEAETVAALLQSQVQGGLRISTSVAFGRRVLVPLVMRFMKLHPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCC
LQIELNFEDRYVDLVEQGIDVAIRMGPLADSTLGARYLGVNPWVLVASPEYLERRGEPSV
EEEEECCCHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCCCEEEEECHHHHHHCCCCCC
PADLAAHEALIYSTVQGDARWHFTGTDGLTLPVPVKGPLRSNNLSALLAAARGGMGVAAL
CHHHHHHHHHHEEEECCCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCHHHH
PRYVAHKSIRSGVLRPLLTDWTLPQQEIHAVYPSPQLVPTKVSGFVAWLQGQFGEAWWAD
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCCCCHHHHHHHHHHHCCCCCCCCCC
EQ
CC
>Mature Secondary Structure
MDRIQAIQLFIRVVDLGSFSKAAADVGIGQPSATKLVAQLEKQLGSRLLHRSTHGVTPTE
CCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
IGALYYEKCKLIAHHIEEAETVAALLQSQVQGGLRISTSVAFGRRVLVPLVMRFMKLHPQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCC
LQIELNFEDRYVDLVEQGIDVAIRMGPLADSTLGARYLGVNPWVLVASPEYLERRGEPSV
EEEEECCCHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCCCEEEEECHHHHHHCCCCCC
PADLAAHEALIYSTVQGDARWHFTGTDGLTLPVPVKGPLRSNNLSALLAAARGGMGVAAL
CHHHHHHHHHHEEEECCCCEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCHHHH
PRYVAHKSIRSGVLRPLLTDWTLPQQEIHAVYPSPQLVPTKVSGFVAWLQGQFGEAWWAD
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCCCCHHHHHHHHHHHCCCCCCCCCC
EQ
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]