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The map label for this gene is ybhD [H]

Identifier: 91790382

GI number: 91790382

Start: 4815495

End: 4816418

Strand: Reverse

Name: ybhD [H]

Synonym: Bpro_4552

Alternate gene names: 91790382

Gene position: 4816418-4815495 (Counterclockwise)

Preceding gene: 91790390

Following gene: 91790378

Centisome position: 92.62

GC content: 63.31

Gene sequence:

>924_bases
ATGGCACGCATTAATTTTGATTTGCAGCAATTGCAGGGTTTTGTGGCCGTGGCCGAGCGGGGCAGCTTTCGCGCGGCGGC
CGAGCACATCAACCTGTCGTCCCCGGCGCTGAGCCGGCGCATCGACAAACTCGAAACCATCCTGGGGGCGCGCCTGTTCA
ACCGCACCACGCGCGAGGTTGAACTCACGCCGCTGGGCCGGGTGTTCCTGGAGCGCGCGCGCACCGCGCTGGACGACCTG
GAATCGGCCATGCTCGGTATTGCCGACATCGCCACTCACCGGGGTGGGCGCGTGACGGTAGCCTGCGTGCCGTCGGCCGC
CTTGTACTTTTTACCGACGGTGGTGAGCAATTTTTCTCAGCACTATCCCGGCATCCGGGTACGGGTGGTGGATGAGACGA
TGAACCAGGTGCTGCAAAGCGTGCTGTCAGGCGAATCCGACTTTGGCATCGGCTTCATGAATACGCTGGTGCCCGAGATC
GCCTTCGAGTCCATCCACAACGATCCATTTGTGCTGGCGATGCGGCGTGAACATCCGCTGGCCAGGCACAAGTCGGTGAA
CTGGGCGGATGTGGAGAAGGAGAGCCTGATTGCCGTGGCCCGCAGCAGCGGCAACCGCCAGCTGCTGGATGATTCACTGA
CCAAGGCAGGTTTGAACCCGAGCTTCGCGTTCGAGGTCAGCCACGTTGCGACCTTGCTGGGCATGGTGGAGGCTGGCCTG
GGTTTGGCGGCAGTGCCACGCATGGCGCTGGCAAGCACGCACGCCACTCTGGTGGGGCTGCCCTTGCGTCAGCCACAAAC
CGTGCGCAGGGTGGGTCTGCTGACACGCCACGGCGTCAAGCTGCGGCCAGCAGCCGAGATGTTTCACCAGCATCTGCGCA
GGGCACTGAAGACCCGTAAATCGGCCACTGCCGATCCGGCCTGA

Upstream 100 bases:

>100_bases
TTCGGTTGGGCTTCGGGTCAGGAGGTTGACCCGTGCTTTGGACTTAATCATCCGGTTATCCTGCTTGCGTGTAAATTGCA
ATTTTTGCTACGATTGCTGC

Downstream 100 bases:

>100_bases
GGGCTGGGACCGTGTAGCACCGTTTAAAGCTGCATGCGCAGCAGGGGGCAATCTGCTGGCTACTCGACCATCTGCGTTTC
CATCCGCAGACCCGTCTGCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MARINFDLQQLQGFVAVAERGSFRAAAEHINLSSPALSRRIDKLETILGARLFNRTTREVELTPLGRVFLERARTALDDL
ESAMLGIADIATHRGGRVTVACVPSAALYFLPTVVSNFSQHYPGIRVRVVDETMNQVLQSVLSGESDFGIGFMNTLVPEI
AFESIHNDPFVLAMRREHPLARHKSVNWADVEKESLIAVARSSGNRQLLDDSLTKAGLNPSFAFEVSHVATLLGMVEAGL
GLAAVPRMALASTHATLVGLPLRQPQTVRRVGLLTRHGVKLRPAAEMFHQHLRRALKTRKSATADPA

Sequences:

>Translated_307_residues
MARINFDLQQLQGFVAVAERGSFRAAAEHINLSSPALSRRIDKLETILGARLFNRTTREVELTPLGRVFLERARTALDDL
ESAMLGIADIATHRGGRVTVACVPSAALYFLPTVVSNFSQHYPGIRVRVVDETMNQVLQSVLSGESDFGIGFMNTLVPEI
AFESIHNDPFVLAMRREHPLARHKSVNWADVEKESLIAVARSSGNRQLLDDSLTKAGLNPSFAFEVSHVATLLGMVEAGL
GLAAVPRMALASTHATLVGLPLRQPQTVRRVGLLTRHGVKLRPAAEMFHQHLRRALKTRKSATADPA
>Mature_306_residues
ARINFDLQQLQGFVAVAERGSFRAAAEHINLSSPALSRRIDKLETILGARLFNRTTREVELTPLGRVFLERARTALDDLE
SAMLGIADIATHRGGRVTVACVPSAALYFLPTVVSNFSQHYPGIRVRVVDETMNQVLQSVLSGESDFGIGFMNTLVPEIA
FESIHNDPFVLAMRREHPLARHKSVNWADVEKESLIAVARSSGNRQLLDDSLTKAGLNPSFAFEVSHVATLLGMVEAGLG
LAAVPRMALASTHATLVGLPLRQPQTVRRVGLLTRHGVKLRPAAEMFHQHLRRALKTRKSATADPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=283, Percent_Identity=40.6360424028269, Blast_Score=237, Evalue=6e-64,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=32.0689655172414, Blast_Score=140, Evalue=8e-35,
Organism=Escherichia coli, GI157672245, Length=275, Percent_Identity=30.1818181818182, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1790399, Length=294, Percent_Identity=27.891156462585, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787879, Length=299, Percent_Identity=29.4314381270903, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87081904, Length=294, Percent_Identity=29.2517006802721, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1788887, Length=243, Percent_Identity=27.9835390946502, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787601, Length=182, Percent_Identity=30.7692307692308, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI2367136, Length=261, Percent_Identity=29.5019157088123, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789204, Length=264, Percent_Identity=29.1666666666667, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787530, Length=265, Percent_Identity=24.1509433962264, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787806, Length=282, Percent_Identity=26.241134751773, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787128, Length=134, Percent_Identity=35.8208955223881, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786508, Length=182, Percent_Identity=29.6703296703297, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790783, Length=296, Percent_Identity=26.3513513513513, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788297, Length=245, Percent_Identity=22.4489795918367, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790262, Length=252, Percent_Identity=24.2063492063492, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788706, Length=134, Percent_Identity=34.3283582089552, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1786401, Length=132, Percent_Identity=31.8181818181818, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790208, Length=278, Percent_Identity=26.6187050359712, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788481, Length=244, Percent_Identity=26.6393442622951, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789506, Length=286, Percent_Identity=20.6293706293706, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1786713, Length=181, Percent_Identity=30.939226519337, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787589, Length=144, Percent_Identity=31.9444444444444, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788296, Length=226, Percent_Identity=26.1061946902655, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI145693193, Length=122, Percent_Identity=34.4262295081967, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789639, Length=123, Percent_Identity=29.2682926829268, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789173, Length=161, Percent_Identity=30.4347826086957, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1786448, Length=126, Percent_Identity=32.5396825396825, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33621; Mature: 33490

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARINFDLQQLQGFVAVAERGSFRAAAEHINLSSPALSRRIDKLETILGARLFNRTTREV
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
ELTPLGRVFLERARTALDDLESAMLGIADIATHRGGRVTVACVPSAALYFLPTVVSNFSQ
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHH
HYPGIRVRVVDETMNQVLQSVLSGESDFGIGFMNTLVPEIAFESIHNDPFVLAMRREHPL
HCCCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCH
ARHKSVNWADVEKESLIAVARSSGNRQLLDDSLTKAGLNPSFAFEVSHVATLLGMVEAGL
HHHCCCCHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
GLAAVPRMALASTHATLVGLPLRQPQTVRRVGLLTRHGVKLRPAAEMFHQHLRRALKTRK
CHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
SATADPA
CCCCCCC
>Mature Secondary Structure 
ARINFDLQQLQGFVAVAERGSFRAAAEHINLSSPALSRRIDKLETILGARLFNRTTREV
CCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
ELTPLGRVFLERARTALDDLESAMLGIADIATHRGGRVTVACVPSAALYFLPTVVSNFSQ
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHH
HYPGIRVRVVDETMNQVLQSVLSGESDFGIGFMNTLVPEIAFESIHNDPFVLAMRREHPL
HCCCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCH
ARHKSVNWADVEKESLIAVARSSGNRQLLDDSLTKAGLNPSFAFEVSHVATLLGMVEAGL
HHHCCCCHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
GLAAVPRMALASTHATLVGLPLRQPQTVRRVGLLTRHGVKLRPAAEMFHQHLRRALKTRK
CHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
SATADPA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]