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The map label for this gene is ydcN [H]

Identifier: 91790200

GI number: 91790200

Start: 4606777

End: 4607370

Strand: Reverse

Name: ydcN [H]

Synonym: Bpro_4365

Alternate gene names: 91790200

Gene position: 4607370-4606777 (Counterclockwise)

Preceding gene: 91790203

Following gene: 91790198

Centisome position: 88.6

GC content: 58.75

Gene sequence:

>594_bases
ATGCAAATCTCGCGTTCAGAGAGCCGTTCTGAAGGACCGCCAGCCGTCGGCGAGACCTTGAAGACGCTGCGCCAATCGCA
GCGTCTTTCCCTTGATGACTTGTCGAGGCGTGCTGGAGTTTCAAAATCGATGCTCTCGCAGATCGAGCGCAATGAGGCTA
ATCCGACGGTGGCGATTCTCTGGCGCCTGGCCAGTGCTCTTGGCATCGACATCACTGATTTCCTCAGCGCTGGCCAAGCC
AAGACCGCAGCGGCCGCCGTTACCGTCACCGCGGCCCATGAGATGCCGACGATCAAAAGTGCCGACGGGAAATGTGAGCT
TCGCATCCTCAGTCCAATCAACATGGCAGGTGCTGTCGAGTGGTACCAGCTGACCATTACGGCCGGCGGCGTTTTGGCAT
CTGAGCCGCATGAGAAGGGGGCCAAGGAACACCTCTCCGTGCAAAGCGGCGCTATGACGGTGCGTGCCGGGGCCAGCGAA
GGGATTGTGCGCAGTGGCGATACGGCACGGTATTCAGCCGATCTGCAGCATTCGATTGCCAATCAAGGCAAGACGGCAGC
AACAGCACTACTTGTTGTCGAATACGGCCATTGA

Upstream 100 bases:

>100_bases
GGTAAGCATTGGGTAGTCCTGCTAGGATCGGGTTATTCATCATTTTGGCGATTTCCACTAATAAACGCCGTATGTCCACT
ATATCGAACAATTCGTGAAT

Downstream 100 bases:

>100_bases
GTGGCGAAAACGGCCAGCAGATGGATGACTCATACTTTAAGTCAAAGCATCTTCGTGCGATCCAGGCGCTCGTAGCCGGG
AGGGGGCACGAACAATCCGC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MQISRSESRSEGPPAVGETLKTLRQSQRLSLDDLSRRAGVSKSMLSQIERNEANPTVAILWRLASALGIDITDFLSAGQA
KTAAAAVTVTAAHEMPTIKSADGKCELRILSPINMAGAVEWYQLTITAGGVLASEPHEKGAKEHLSVQSGAMTVRAGASE
GIVRSGDTARYSADLQHSIANQGKTAATALLVVEYGH

Sequences:

>Translated_197_residues
MQISRSESRSEGPPAVGETLKTLRQSQRLSLDDLSRRAGVSKSMLSQIERNEANPTVAILWRLASALGIDITDFLSAGQA
KTAAAAVTVTAAHEMPTIKSADGKCELRILSPINMAGAVEWYQLTITAGGVLASEPHEKGAKEHLSVQSGAMTVRAGASE
GIVRSGDTARYSADLQHSIANQGKTAATALLVVEYGH
>Mature_197_residues
MQISRSESRSEGPPAVGETLKTLRQSQRLSLDDLSRRAGVSKSMLSQIERNEANPTVAILWRLASALGIDITDFLSAGQA
KTAAAAVTVTAAHEMPTIKSADGKCELRILSPINMAGAVEWYQLTITAGGVLASEPHEKGAKEHLSVQSGAMTVRAGASE
GIVRSGDTARYSADLQHSIANQGKTAATALLVVEYGH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=183, Percent_Identity=31.1475409836066, Blast_Score=97, Evalue=9e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 20738; Mature: 20738

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQISRSESRSEGPPAVGETLKTLRQSQRLSLDDLSRRAGVSKSMLSQIERNEANPTVAIL
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHHHH
WRLASALGIDITDFLSAGQAKTAAAAVTVTAAHEMPTIKSADGKCELRILSPINMAGAVE
HHHHHHHCCCHHHHHCCCCCCHHHHEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCEE
WYQLTITAGGVLASEPHEKGAKEHLSVQSGAMTVRAGASEGIVRSGDTARYSADLQHSIA
EEEEEEEECCEECCCCHHCCHHHHHHHCCCCEEEECCCCCCCEECCCCCHHHHHHHHHHH
NQGKTAATALLVVEYGH
CCCCCCEEEEEEEEECC
>Mature Secondary Structure
MQISRSESRSEGPPAVGETLKTLRQSQRLSLDDLSRRAGVSKSMLSQIERNEANPTVAIL
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHHHH
WRLASALGIDITDFLSAGQAKTAAAAVTVTAAHEMPTIKSADGKCELRILSPINMAGAVE
HHHHHHHCCCHHHHHCCCCCCHHHHEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCEE
WYQLTITAGGVLASEPHEKGAKEHLSVQSGAMTVRAGASEGIVRSGDTARYSADLQHSIA
EEEEEEEECCEECCCCHHCCHHHHHHHCCCCEEEECCCCCCCEECCCCCHHHHHHHHHHH
NQGKTAATALLVVEYGH
CCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]