Click here to switch to the map view.

The map label for this gene is nocR [H]

Identifier: 91790182

GI number: 91790182

Start: 4585170

End: 4586078

Strand: Direct

Name: nocR [H]

Synonym: Bpro_4347

Alternate gene names: 91790182

Gene position: 4585170-4586078 (Clockwise)

Preceding gene: 91790169

Following gene: 91790183

Centisome position: 88.17

GC content: 57.54

Gene sequence:

>909_bases
ATGCCAACAGAAGTACCCACCCACCGGATGATCGAAGCGTTCCGCGCGGCCATCATCAACGGCGGGATTAGTGCGGCAGC
AGATGCTCTAGGCATGTCGCAGCCGTCGATGAGTCGCGTCATAGCAGAGCTTCAGAAAATCGTGGGTTACCAGCTCTTCG
TCAAGCACGGTCGAACAGTGAAACCGACGGAAGAAGCCCTTGCGCTCATGACGAAAGTACAACAGTCCTTCCTGGGGCTT
GAAGACATCGCCCGCTTTTCCGAGCAGTTACGAAAACAACGAATGGGACGGCTGTCGATCTGCGCGTTACCAGCTATCGG
TCATTCGATCATGCCTGAAGCGATCTATTTCCTTCGGCAGAAGTACCCGAACGTGGTTGTAAGCCTCGACATCGCCTCCT
CAATCGAAGTGGCTGGCCGTGTCCGAAATCGTCAGGCAGACATCGGTTTTGCCGCTCACGGACTAGCGCTCGGCGAGGTG
GAGACCGTCGCGGAGTTCACTGCCAACTGCGTCTGCATCGCTGCAGCTGGTGGACTGCCCGACGAGTGGGACTACGTCGA
GCTCCAGCAGTTGACTGGAAGGCCCTTCGTAGCGCTTACGGGCCCACTTCAAAAGCGGCTTGAGGTCATGTTGAACGGGG
TCGGCGGAGAACTCGACATCATGGCAGAGGCAGGACTGTCACTCTCAGTCAGCGAACTCGTACTGCGGGGGCTCGGAATC
TCCGTGGTCGATCCATTTACCGGGAATCTGCATCGTTTACGAGGCGGCGCCACTTTACCGCTGCGTCCAAGCTTGCCGTA
CCAAGTACAGGCCATGGCATTGGGCGATACCCGACTGAGTGCACCCGCAAGAGATCTCCTGCAATATCTAGAGTCCGCTG
CTGACACGATACAGGACGCATGCCGGTGA

Upstream 100 bases:

>100_bases
GAATCGAGGATTTTCCGGAAAAACGCACACACTAACCATCGCGCGGCGTCTGGCGAATCATGCACACAGGCTATAGGTTA
AGTTGATCAACAAGGTCGTT

Downstream 100 bases:

>100_bases
CGAATAGGCCACGTGGCCGGAAAGTACTACGACTATGGATCAAAGAATCACACTACGCCACCTCGAAGCGTTTCGCGCCG
TCATGGTGCGAAGGTCAGTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MPTEVPTHRMIEAFRAAIINGGISAAADALGMSQPSMSRVIAELQKIVGYQLFVKHGRTVKPTEEALALMTKVQQSFLGL
EDIARFSEQLRKQRMGRLSICALPAIGHSIMPEAIYFLRQKYPNVVVSLDIASSIEVAGRVRNRQADIGFAAHGLALGEV
ETVAEFTANCVCIAAAGGLPDEWDYVELQQLTGRPFVALTGPLQKRLEVMLNGVGGELDIMAEAGLSLSVSELVLRGLGI
SVVDPFTGNLHRLRGGATLPLRPSLPYQVQAMALGDTRLSAPARDLLQYLESAADTIQDACR

Sequences:

>Translated_302_residues
MPTEVPTHRMIEAFRAAIINGGISAAADALGMSQPSMSRVIAELQKIVGYQLFVKHGRTVKPTEEALALMTKVQQSFLGL
EDIARFSEQLRKQRMGRLSICALPAIGHSIMPEAIYFLRQKYPNVVVSLDIASSIEVAGRVRNRQADIGFAAHGLALGEV
ETVAEFTANCVCIAAAGGLPDEWDYVELQQLTGRPFVALTGPLQKRLEVMLNGVGGELDIMAEAGLSLSVSELVLRGLGI
SVVDPFTGNLHRLRGGATLPLRPSLPYQVQAMALGDTRLSAPARDLLQYLESAADTIQDACR
>Mature_301_residues
PTEVPTHRMIEAFRAAIINGGISAAADALGMSQPSMSRVIAELQKIVGYQLFVKHGRTVKPTEEALALMTKVQQSFLGLE
DIARFSEQLRKQRMGRLSICALPAIGHSIMPEAIYFLRQKYPNVVVSLDIASSIEVAGRVRNRQADIGFAAHGLALGEVE
TVAEFTANCVCIAAAGGLPDEWDYVELQQLTGRPFVALTGPLQKRLEVMLNGVGGELDIMAEAGLSLSVSELVLRGLGIS
VVDPFTGNLHRLRGGATLPLRPSLPYQVQAMALGDTRLSAPARDLLQYLESAADTIQDACR

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=242, Percent_Identity=27.6859504132231, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1788481, Length=244, Percent_Identity=26.6393442622951, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32549; Mature: 32418

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTEVPTHRMIEAFRAAIINGGISAAADALGMSQPSMSRVIAELQKIVGYQLFVKHGRTV
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
KPTEEALALMTKVQQSFLGLEDIARFSEQLRKQRMGRLSICALPAIGHSIMPEAIYFLRQ
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHHCHHHHHHHHHHHHH
KYPNVVVSLDIASSIEVAGRVRNRQADIGFAAHGLALGEVETVAEFTANCVCIAAAGGLP
HCCCEEEEEECHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHCCEEEEEECCCCC
DEWDYVELQQLTGRPFVALTGPLQKRLEVMLNGVGGELDIMAEAGLSLSVSELVLRGLGI
CCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCCC
SVVDPFTGNLHRLRGGATLPLRPSLPYQVQAMALGDTRLSAPARDLLQYLESAADTIQDA
EEECCCCCCHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
CR
CC
>Mature Secondary Structure 
PTEVPTHRMIEAFRAAIINGGISAAADALGMSQPSMSRVIAELQKIVGYQLFVKHGRTV
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
KPTEEALALMTKVQQSFLGLEDIARFSEQLRKQRMGRLSICALPAIGHSIMPEAIYFLRQ
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHHCHHHHHHHHHHHHH
KYPNVVVSLDIASSIEVAGRVRNRQADIGFAAHGLALGEVETVAEFTANCVCIAAAGGLP
HCCCEEEEEECHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHCCEEEEEECCCCC
DEWDYVELQQLTGRPFVALTGPLQKRLEVMLNGVGGELDIMAEAGLSLSVSELVLRGLGI
CCCCHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCCC
SVVDPFTGNLHRLRGGATLPLRPSLPYQVQAMALGDTRLSAPARDLLQYLESAADTIQDA
EEECCCCCCHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
CR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]