| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789835
Identifier: 91789835
GI number: 91789835
Start: 4189966
End: 4191459
Strand: Reverse
Name: 91789835
Synonym: Bpro_3995
Alternate gene names: NA
Gene position: 4191459-4189966 (Counterclockwise)
Preceding gene: 91789836
Following gene: 91789834
Centisome position: 80.6
GC content: 49.26
Gene sequence:
>1494_bases GTGAAACTGGGCCGCAATCTGCTGGCGGGGATTGCCAGTTCGGCTTGGTCAGCGCTGGTTGGCTTGACGGTTGTTCCTTT TTATCTCAAATATCTCGGAATAGAAGCCTACGGTCTAATTGGGTTTTTTCTGACGACCCAGGCGTTGCTTCAACTCCTTG ACATGGGTATGGCTCCGACCATCAACCGGGAGGTTGCGAGATATTCAGCCTCTGGAAATTTGCAGGAATCAGGGACACTG TTGCATACGTTGGCCATGGTTTACTGGGCGATGGCTGTGGCAATCGCCGTGCTGATCGCGGCGGTCGCGCCATGGATTGC GCAATACTGGATCCAGTCCAGACAACTCTCGGCGCAAACAGTCTCACATGCAGTGGTGTTAATGGGACTGGTGGTGGCCT GCCGCTGGCCGATCGGCTTGTATCAGGGGGCGCTGATTGGCGCGGAACGTTTGACGGTACTGAGTGGCATCAATATTGTC ATGACCACAGCTGGAAGCGTGGGGGCGGTGGCAGTGCTTGCTCTTGTCTCGCCCACCATTGAGGCATTTTTTGTATGGCA GGCTTGCATGGGTCTGGTTTATGCAGTAGCAATACGCGGGGCTGCCTGGCGAATAATTGGAAAAGTTAAAAAAATAAGTT TTGATATTGATAAGTTGAAAAGCGTATGGCGGTTTACTGCCAATATGAGCGGCATTGGACTGACGGCACTGGTCATTACG CAGTTAGACAAGGTGATACTCAGCAAAACGTTGGGATTGGAAGAGTTTGGCCACTACATGCTGGCTATGGTGGTTGTAAC TGGTTTGCAGGTTTTTATCACCCCCCTGTTCAATGTCATTTATCCTCGTTTTTCCGCACTGGTCGTTAATGGTGAGATCG GGGAACTGATCAATCTATACCGATTGGGAACGCGTATGCTCGCAACGGTGCTTTTCCCTATCGCCATGGTATTGGCCATT TTCGCAGAGGATTTGGTGCTGGTTTGGACAGGTAATCCGACTATAGCATCAAGCGTAGCACCAATAATGGCTTTAATGGC TTTGGGTTCGGCCGTGCACGGAACCATGTATTTCCCATATGCACTGCAATTGGCTTTTGGAATGCCGAGGCTGGCGCTGA CAATCAATACTATCCTGATGACAGTGATGGTCCCTTTGATTATTGGTTTTTCACTGCAATATGGGGCGCTAGGCGGTGCT ATGGCATGGCTTGTATTACACGTGTCGTACCTGTTATTGGGAACGTGGATGACACATCGCCACCTGCTAAAAGGAACTGG AACTCAATGGCTTTTCCACGACGTCGGTATACCGTTTGCACTCTCTGTCCTGGCTGGCCTGACAGGGCATTACGCCGTCA GCGATGCGGAATACTCTTTCTTGGTGAAATTAATTTATTTGATGGGGCTATCTCTCGTGGTAGTCGTTATTTCCATTTTT ACTCTGCCAGAAAAATCGAAGACTATTTTTTTTGGTATATTCAAAAAAACTTGA
Upstream 100 bases:
>100_bases GGCACGAGAAGGCCTAAAATTAACTGAGCGAAATGAATTGATAAGAAGAGTTGATAAAACCCATGATTACCATTCAAATA TTCAACATGAGTAATCTCGT
Downstream 100 bases:
>100_bases AGAGAAAATCAAGAGAGGCAATGCCACTTCATGAATGATGCAAAACACGTAAAGCAAGGTCCTATTTACTATTCGCAGTT CGGCGAAGATAAAATTCTTT
Product: polysaccharide biosynthesis protein
Products: NA
Alternate protein names: Polysaccharide Biosynthesis Domain-Containing Protein; O-Antigen Exporter/Flippase; Polysaccharide Biosynthesis Domain Protein; O-Antigen Transporter; O-Antigen Transporter-Like; O-Antigen Flippase
Number of amino acids: Translated: 497; Mature: 497
Protein sequence:
>497_residues MKLGRNLLAGIASSAWSALVGLTVVPFYLKYLGIEAYGLIGFFLTTQALLQLLDMGMAPTINREVARYSASGNLQESGTL LHTLAMVYWAMAVAIAVLIAAVAPWIAQYWIQSRQLSAQTVSHAVVLMGLVVACRWPIGLYQGALIGAERLTVLSGINIV MTTAGSVGAVAVLALVSPTIEAFFVWQACMGLVYAVAIRGAAWRIIGKVKKISFDIDKLKSVWRFTANMSGIGLTALVIT QLDKVILSKTLGLEEFGHYMLAMVVVTGLQVFITPLFNVIYPRFSALVVNGEIGELINLYRLGTRMLATVLFPIAMVLAI FAEDLVLVWTGNPTIASSVAPIMALMALGSAVHGTMYFPYALQLAFGMPRLALTINTILMTVMVPLIIGFSLQYGALGGA MAWLVLHVSYLLLGTWMTHRHLLKGTGTQWLFHDVGIPFALSVLAGLTGHYAVSDAEYSFLVKLIYLMGLSLVVVVISIF TLPEKSKTIFFGIFKKT
Sequences:
>Translated_497_residues MKLGRNLLAGIASSAWSALVGLTVVPFYLKYLGIEAYGLIGFFLTTQALLQLLDMGMAPTINREVARYSASGNLQESGTL LHTLAMVYWAMAVAIAVLIAAVAPWIAQYWIQSRQLSAQTVSHAVVLMGLVVACRWPIGLYQGALIGAERLTVLSGINIV MTTAGSVGAVAVLALVSPTIEAFFVWQACMGLVYAVAIRGAAWRIIGKVKKISFDIDKLKSVWRFTANMSGIGLTALVIT QLDKVILSKTLGLEEFGHYMLAMVVVTGLQVFITPLFNVIYPRFSALVVNGEIGELINLYRLGTRMLATVLFPIAMVLAI FAEDLVLVWTGNPTIASSVAPIMALMALGSAVHGTMYFPYALQLAFGMPRLALTINTILMTVMVPLIIGFSLQYGALGGA MAWLVLHVSYLLLGTWMTHRHLLKGTGTQWLFHDVGIPFALSVLAGLTGHYAVSDAEYSFLVKLIYLMGLSLVVVVISIF TLPEKSKTIFFGIFKKT >Mature_497_residues MKLGRNLLAGIASSAWSALVGLTVVPFYLKYLGIEAYGLIGFFLTTQALLQLLDMGMAPTINREVARYSASGNLQESGTL LHTLAMVYWAMAVAIAVLIAAVAPWIAQYWIQSRQLSAQTVSHAVVLMGLVVACRWPIGLYQGALIGAERLTVLSGINIV MTTAGSVGAVAVLALVSPTIEAFFVWQACMGLVYAVAIRGAAWRIIGKVKKISFDIDKLKSVWRFTANMSGIGLTALVIT QLDKVILSKTLGLEEFGHYMLAMVVVTGLQVFITPLFNVIYPRFSALVVNGEIGELINLYRLGTRMLATVLFPIAMVLAI FAEDLVLVWTGNPTIASSVAPIMALMALGSAVHGTMYFPYALQLAFGMPRLALTINTILMTVMVPLIIGFSLQYGALGGA MAWLVLHVSYLLLGTWMTHRHLLKGTGTQWLFHDVGIPFALSVLAGLTGHYAVSDAEYSFLVKLIYLMGLSLVVVVISIF TLPEKSKTIFFGIFKKT
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53809; Mature: 53809
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLGRNLLAGIASSAWSALVGLTVVPFYLKYLGIEAYGLIGFFLTTQALLQLLDMGMAPT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC INREVARYSASGNLQESGTLLHTLAMVYWAMAVAIAVLIAAVAPWIAQYWIQSRQLSAQT CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSHAVVLMGLVVACRWPIGLYQGALIGAERLTVLSGINIVMTTAGSVGAVAVLALVSPTI HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHH EAFFVWQACMGLVYAVAIRGAAWRIIGKVKKISFDIDKLKSVWRFTANMSGIGLTALVIT HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHH QLDKVILSKTLGLEEFGHYMLAMVVVTGLQVFITPLFNVIYPRFSALVVNGEIGELINLY HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHH RLGTRMLATVLFPIAMVLAIFAEDLVLVWTGNPTIASSVAPIMALMALGSAVHGTMYFPY HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHHHH ALQLAFGMPRLALTINTILMTVMVPLIIGFSLQYGALGGAMAWLVLHVSYLLLGTWMTHR HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHH HLLKGTGTQWLFHDVGIPFALSVLAGLTGHYAVSDAEYSFLVKLIYLMGLSLVVVVISIF HHHHCCCCCHHHHHCCHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHH TLPEKSKTIFFGIFKKT CCCCCCCEEEEEEEECC >Mature Secondary Structure MKLGRNLLAGIASSAWSALVGLTVVPFYLKYLGIEAYGLIGFFLTTQALLQLLDMGMAPT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC INREVARYSASGNLQESGTLLHTLAMVYWAMAVAIAVLIAAVAPWIAQYWIQSRQLSAQT CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSHAVVLMGLVVACRWPIGLYQGALIGAERLTVLSGINIVMTTAGSVGAVAVLALVSPTI HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHH EAFFVWQACMGLVYAVAIRGAAWRIIGKVKKISFDIDKLKSVWRFTANMSGIGLTALVIT HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHH QLDKVILSKTLGLEEFGHYMLAMVVVTGLQVFITPLFNVIYPRFSALVVNGEIGELINLY HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHH RLGTRMLATVLFPIAMVLAIFAEDLVLVWTGNPTIASSVAPIMALMALGSAVHGTMYFPY HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHHHH ALQLAFGMPRLALTINTILMTVMVPLIIGFSLQYGALGGAMAWLVLHVSYLLLGTWMTHR HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHH HLLKGTGTQWLFHDVGIPFALSVLAGLTGHYAVSDAEYSFLVKLIYLMGLSLVVVVISIF HHHHCCCCCHHHHHCCHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHH TLPEKSKTIFFGIFKKT CCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA