| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789811
Identifier: 91789811
GI number: 91789811
Start: 4164425
End: 4165558
Strand: Reverse
Name: 91789811
Synonym: Bpro_3971
Alternate gene names: NA
Gene position: 4165558-4164425 (Counterclockwise)
Preceding gene: 91789812
Following gene: 91789810
Centisome position: 80.1
GC content: 67.28
Gene sequence:
>1134_bases ATGACCACGGCAGCCGCCCCGGCGGGTAAAAGGCAGATCGCCCTCTCGGCCGTCGACGGCAAGCTGGTGCTGGACAAGGG CGCCATCAAAGTCATCAACCACGGTGAGCGCGACGGCGCCATGCTGTACGACCTGTCCGTCTTCCCACCCCGGGAAGTGG GCTATCTGGCCATGCCCACCAGCCTGGCTGGTCCGCCGCAAAGTGCGGCCGTCAGCCCGGACCAGACGCTGGCCCTGGTC ACGGCCGCGCAGAAAACCGATCCGGCCAACCCCGCACGCACGATTCCCGACACGCGCGTGACCGTCATCGACATCGCGTC CGGGCCCGCACGCATTACGCAAACCCTGGAAGCCGGACTGGGCCCCACGGGGGTGTCGTTTTCACCCGACGGGCGCATGG CCGTGGTGGCCAACCGCAATGACGGCACGCTGTCCGTGTTCCGTGTCGAGGGCCAAGCCCTGGTCAAAACTGCCACCGTG CCGGTCGGTGACCGCCAGTGCCAGCCTGCGTCAACTGCCTTCACGCCCGATGGCGCCACCTTGCTGGTGTCGCGCGACGG CGACCACTTCGTGTCGGTTTTTGATGTGGCCGATGGCCAGGTGCGGGCGGCCGGGCGCGATATCAGCGCCGGCATCAAGC CCTATGGCCTGTCGGTGGCGCCCAACGGTCAGTTCGCGGTGACGGCGAACGTGGGGCGGGTCAGCGGCGACGCGGACTCG ATCAGCGTGATCGATCTCACGCGCAAGCCCTACCGCGTGATGGACACGCTGGGTGTTGCCGCGACGCCGGAAGCGGTGCT GATCTCGCCCGATGGCGCCTGGGTGGTGGCGGTGTGCCACAACGGCTCCACCCGTGTTGAGGACTCGCCTTTTTTCAACC CGAACGGCACCCTGGTGGTGTTCCGTGTCAGCGGCCTGCAGCTGGTCCGCCATGCCGAGCACCCGATTGGCCGCTGGGCG CAGGGCGCGGCGTTTTCGCACGACAGCACCGCCCTGCTGGTGCAAAACACCGTGGAGCGTGAGCTGCAGGTATTTCGCGT TGGCAGCCAGGGTTTCACCGACACTGGCGAGCGGCTGCCCATTGCCTTCGGCAGCTTTGCCGCCATCCGCACCGTCGATT TTCCATCCACCTGA
Upstream 100 bases:
>100_bases TCGCGCGCGCGCAGCAACAGGGCATTGCCCTGAGTGACGCCACGCTGGACAAACTCGCGGCCTGCGCGACCCAATTGGGC GTTGCACCACTCGGCAACGC
Downstream 100 bases:
>100_bases TCACCTATGCAGCCATTGAACCAAGCCACACTGACGCAGTTGACGGACTCTGCGCTTGCCACACCATCGCCTGTTCAACT GCCGCGCTACCGCCGCACCG
Product: hypothetical protein
Products: NA
Alternate protein names: Surface Layer Protein; 40-Residue YVTN Family Beta-Propeller Repeat Protein; Beta-Propeller Fold Protein; Surface Antigen Gene; Serine/Threonine Protein Kinase; Cell Surface Protein; Triple Helix Repeat-Containing Collagen; 40-Residue Yvtn Family Beta-Propeller Repeat Protein; YVTN Family Beta-Propeller Repeat Family Protein
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MTTAAAPAGKRQIALSAVDGKLVLDKGAIKVINHGERDGAMLYDLSVFPPREVGYLAMPTSLAGPPQSAAVSPDQTLALV TAAQKTDPANPARTIPDTRVTVIDIASGPARITQTLEAGLGPTGVSFSPDGRMAVVANRNDGTLSVFRVEGQALVKTATV PVGDRQCQPASTAFTPDGATLLVSRDGDHFVSVFDVADGQVRAAGRDISAGIKPYGLSVAPNGQFAVTANVGRVSGDADS ISVIDLTRKPYRVMDTLGVAATPEAVLISPDGAWVVAVCHNGSTRVEDSPFFNPNGTLVVFRVSGLQLVRHAEHPIGRWA QGAAFSHDSTALLVQNTVERELQVFRVGSQGFTDTGERLPIAFGSFAAIRTVDFPST
Sequences:
>Translated_377_residues MTTAAAPAGKRQIALSAVDGKLVLDKGAIKVINHGERDGAMLYDLSVFPPREVGYLAMPTSLAGPPQSAAVSPDQTLALV TAAQKTDPANPARTIPDTRVTVIDIASGPARITQTLEAGLGPTGVSFSPDGRMAVVANRNDGTLSVFRVEGQALVKTATV PVGDRQCQPASTAFTPDGATLLVSRDGDHFVSVFDVADGQVRAAGRDISAGIKPYGLSVAPNGQFAVTANVGRVSGDADS ISVIDLTRKPYRVMDTLGVAATPEAVLISPDGAWVVAVCHNGSTRVEDSPFFNPNGTLVVFRVSGLQLVRHAEHPIGRWA QGAAFSHDSTALLVQNTVERELQVFRVGSQGFTDTGERLPIAFGSFAAIRTVDFPST >Mature_376_residues TTAAAPAGKRQIALSAVDGKLVLDKGAIKVINHGERDGAMLYDLSVFPPREVGYLAMPTSLAGPPQSAAVSPDQTLALVT AAQKTDPANPARTIPDTRVTVIDIASGPARITQTLEAGLGPTGVSFSPDGRMAVVANRNDGTLSVFRVEGQALVKTATVP VGDRQCQPASTAFTPDGATLLVSRDGDHFVSVFDVADGQVRAAGRDISAGIKPYGLSVAPNGQFAVTANVGRVSGDADSI SVIDLTRKPYRVMDTLGVAATPEAVLISPDGAWVVAVCHNGSTRVEDSPFFNPNGTLVVFRVSGLQLVRHAEHPIGRWAQ GAAFSHDSTALLVQNTVERELQVFRVGSQGFTDTGERLPIAFGSFAAIRTVDFPST
Specific function: Unknown
COG id: COG3391
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39337; Mature: 39206
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTAAAPAGKRQIALSAVDGKLVLDKGAIKVINHGERDGAMLYDLSVFPPREVGYLAMPT CCCCCCCCCCCEEEEEEECCEEEEECCCEEEEECCCCCCEEEEEEECCCCCCCCEEECCC SLAGPPQSAAVSPDQTLALVTAAQKTDPANPARTIPDTRVTVIDIASGPARITQTLEAGL CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCC GPTGVSFSPDGRMAVVANRNDGTLSVFRVEGQALVKTATVPVGDRQCQPASTAFTPDGAT CCCCCEECCCCCEEEEEECCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCEECCCCCE LLVSRDGDHFVSVFDVADGQVRAAGRDISAGIKPYGLSVAPNGQFAVTANVGRVSGDADS EEEECCCCCEEEEEEECCCEEEECCCCCCCCCCCCEEEECCCCCEEEEEECCEECCCCCC ISVIDLTRKPYRVMDTLGVAATPEAVLISPDGAWVVAVCHNGSTRVEDSPFFNPNGTLVV EEEEEECCCCHHHHHHCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCEEE FRVSGLQLVRHAEHPIGRWAQGAAFSHDSTALLVQNTVERELQVFRVGSQGFTDTGERLP EEECCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEHHHHHEEEEEEECCCCCCCCCCCCE IAFGSFAAIRTVDFPST EEECCEEEEEEECCCCC >Mature Secondary Structure TTAAAPAGKRQIALSAVDGKLVLDKGAIKVINHGERDGAMLYDLSVFPPREVGYLAMPT CCCCCCCCCCEEEEEEECCEEEEECCCEEEEECCCCCCEEEEEEECCCCCCCCEEECCC SLAGPPQSAAVSPDQTLALVTAAQKTDPANPARTIPDTRVTVIDIASGPARITQTLEAGL CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCC GPTGVSFSPDGRMAVVANRNDGTLSVFRVEGQALVKTATVPVGDRQCQPASTAFTPDGAT CCCCCEECCCCCEEEEEECCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCEECCCCCE LLVSRDGDHFVSVFDVADGQVRAAGRDISAGIKPYGLSVAPNGQFAVTANVGRVSGDADS EEEECCCCCEEEEEEECCCEEEECCCCCCCCCCCCEEEECCCCCEEEEEECCEECCCCCC ISVIDLTRKPYRVMDTLGVAATPEAVLISPDGAWVVAVCHNGSTRVEDSPFFNPNGTLVV EEEEEECCCCHHHHHHCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCEEE FRVSGLQLVRHAEHPIGRWAQGAAFSHDSTALLVQNTVERELQVFRVGSQGFTDTGERLP EEECCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEHHHHHEEEEEEECCCCCCCCCCCCE IAFGSFAAIRTVDFPST EEECCEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA