The gene/protein map for NC_007948 is currently unavailable.
Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

Click here to switch to the map view.

The map label for this gene is 91789691

Identifier: 91789691

GI number: 91789691

Start: 4038189

End: 4038746

Strand: Reverse

Name: 91789691

Synonym: Bpro_3847

Alternate gene names: NA

Gene position: 4038746-4038189 (Counterclockwise)

Preceding gene: 91789696

Following gene: 91789687

Centisome position: 77.66

GC content: 60.22

Gene sequence:

>558_bases
TTGAAGGTCTTGAAGCTCTCAGCCCAGGGGTTACCACAGTCGTGGATCAGCCTTGAGGAAGCCGTGTTGCATTACGCGGC
GGACGAAGTGCGCTGGGAGATGGGCGCGCGGGTCGCCACCTTTCATGGCGGCCATAACGCCATCACCGGAATTCAGTCAG
TCATCTCCATCAACAGCATCATCGGCACCAAGGGCGTGCCCAACATCAACCCTTTTGACCTCAAGCCCGGGCTGACCAAC
AGCAAGCTGTTCGCGCGGGACCGCAATGTGTGCGCCTACTGCAGCGGGCATTTCCACGAAGAAGACCTGACCCGCGAGCA
CATCATTCCCTTTGCCCAGAACGGTATCGACACCTGGATGAATGTGGTGACGGCCTGCCGCGCCTGCAACCACCGCAAAA
GCAGCCGCACCCCCGAGCAGGCCCACATGCCGCTGATCTACACGCCCTATGTGCCCAGCCTGTGGGAAGATTTCATCCTG
CGCAACCGCCGCATCCTGGCGGACCAGATGGAATTCCTGATGGCGCACATTCCCAAAACGTCACGCCTGCACGCGTGA

Upstream 100 bases:

>100_bases
ACGTGGTTAATGGGGGATTTAAACCTCATTGTCATGTTTTCACTGTATATTGATACACGGTCGGTCCGATTTCGTGTTTC
CATGTCCATGGAGGTTCGTT

Downstream 100 bases:

>100_bases
CGATCTGATGCCTTCACGCCTGCACGCGTGACGCTCCAGGCGGTCCACGCCTGTTCCTTCATCCTTCAGGCAAACACGCC
GGCCGTCTCCTGCATCCGGC

Product: HNH endonuclease

Products: NA

Alternate protein names: HNH Endonuclease Family Protein; HNH Endonuclease Domain Protein; Endonuclease; Restriction Endonuclease; HNH Endonuclease Domain-Containing Protein; Hnh Endonuclease; HNH Nuclease; McrA/HNH Family Nuclease; Nuclease; Hnh Endonuclease Domain Protein

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MKVLKLSAQGLPQSWISLEEAVLHYAADEVRWEMGARVATFHGGHNAITGIQSVISINSIIGTKGVPNINPFDLKPGLTN
SKLFARDRNVCAYCSGHFHEEDLTREHIIPFAQNGIDTWMNVVTACRACNHRKSSRTPEQAHMPLIYTPYVPSLWEDFIL
RNRRILADQMEFLMAHIPKTSRLHA

Sequences:

>Translated_185_residues
MKVLKLSAQGLPQSWISLEEAVLHYAADEVRWEMGARVATFHGGHNAITGIQSVISINSIIGTKGVPNINPFDLKPGLTN
SKLFARDRNVCAYCSGHFHEEDLTREHIIPFAQNGIDTWMNVVTACRACNHRKSSRTPEQAHMPLIYTPYVPSLWEDFIL
RNRRILADQMEFLMAHIPKTSRLHA
>Mature_185_residues
MKVLKLSAQGLPQSWISLEEAVLHYAADEVRWEMGARVATFHGGHNAITGIQSVISINSIIGTKGVPNINPFDLKPGLTN
SKLFARDRNVCAYCSGHFHEEDLTREHIIPFAQNGIDTWMNVVTACRACNHRKSSRTPEQAHMPLIYTPYVPSLWEDFIL
RNRRILADQMEFLMAHIPKTSRLHA

Specific function: Unknown

COG id: COG1403

COG function: function code V; Restriction endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20916; Mature: 20916

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLKLSAQGLPQSWISLEEAVLHYAADEVRWEMGARVATFHGGHNAITGIQSVISINSI
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHH
IGTKGVPNINPFDLKPGLTNSKLFARDRNVCAYCSGHFHEEDLTREHIIPFAQNGIDTWM
HCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEECCCCCCHHCCHHHCCCHHHCCHHHHH
NVVTACRACNHRKSSRTPEQAHMPLIYTPYVPSLWEDFILRNRRILADQMEFLMAHIPKT
HHHHHHHHHHCCCCCCCCHHHCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
SRLHA
CCCCC
>Mature Secondary Structure
MKVLKLSAQGLPQSWISLEEAVLHYAADEVRWEMGARVATFHGGHNAITGIQSVISINSI
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHH
IGTKGVPNINPFDLKPGLTNSKLFARDRNVCAYCSGHFHEEDLTREHIIPFAQNGIDTWM
HCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEECCCCCCHHCCHHHCCCHHHCCHHHHH
NVVTACRACNHRKSSRTPEQAHMPLIYTPYVPSLWEDFILRNRRILADQMEFLMAHIPKT
HHHHHHHHHHCCCCCCCCHHHCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
SRLHA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA