| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789691
Identifier: 91789691
GI number: 91789691
Start: 4038189
End: 4038746
Strand: Reverse
Name: 91789691
Synonym: Bpro_3847
Alternate gene names: NA
Gene position: 4038746-4038189 (Counterclockwise)
Preceding gene: 91789696
Following gene: 91789687
Centisome position: 77.66
GC content: 60.22
Gene sequence:
>558_bases TTGAAGGTCTTGAAGCTCTCAGCCCAGGGGTTACCACAGTCGTGGATCAGCCTTGAGGAAGCCGTGTTGCATTACGCGGC GGACGAAGTGCGCTGGGAGATGGGCGCGCGGGTCGCCACCTTTCATGGCGGCCATAACGCCATCACCGGAATTCAGTCAG TCATCTCCATCAACAGCATCATCGGCACCAAGGGCGTGCCCAACATCAACCCTTTTGACCTCAAGCCCGGGCTGACCAAC AGCAAGCTGTTCGCGCGGGACCGCAATGTGTGCGCCTACTGCAGCGGGCATTTCCACGAAGAAGACCTGACCCGCGAGCA CATCATTCCCTTTGCCCAGAACGGTATCGACACCTGGATGAATGTGGTGACGGCCTGCCGCGCCTGCAACCACCGCAAAA GCAGCCGCACCCCCGAGCAGGCCCACATGCCGCTGATCTACACGCCCTATGTGCCCAGCCTGTGGGAAGATTTCATCCTG CGCAACCGCCGCATCCTGGCGGACCAGATGGAATTCCTGATGGCGCACATTCCCAAAACGTCACGCCTGCACGCGTGA
Upstream 100 bases:
>100_bases ACGTGGTTAATGGGGGATTTAAACCTCATTGTCATGTTTTCACTGTATATTGATACACGGTCGGTCCGATTTCGTGTTTC CATGTCCATGGAGGTTCGTT
Downstream 100 bases:
>100_bases CGATCTGATGCCTTCACGCCTGCACGCGTGACGCTCCAGGCGGTCCACGCCTGTTCCTTCATCCTTCAGGCAAACACGCC GGCCGTCTCCTGCATCCGGC
Product: HNH endonuclease
Products: NA
Alternate protein names: HNH Endonuclease Family Protein; HNH Endonuclease Domain Protein; Endonuclease; Restriction Endonuclease; HNH Endonuclease Domain-Containing Protein; Hnh Endonuclease; HNH Nuclease; McrA/HNH Family Nuclease; Nuclease; Hnh Endonuclease Domain Protein
Number of amino acids: Translated: 185; Mature: 185
Protein sequence:
>185_residues MKVLKLSAQGLPQSWISLEEAVLHYAADEVRWEMGARVATFHGGHNAITGIQSVISINSIIGTKGVPNINPFDLKPGLTN SKLFARDRNVCAYCSGHFHEEDLTREHIIPFAQNGIDTWMNVVTACRACNHRKSSRTPEQAHMPLIYTPYVPSLWEDFIL RNRRILADQMEFLMAHIPKTSRLHA
Sequences:
>Translated_185_residues MKVLKLSAQGLPQSWISLEEAVLHYAADEVRWEMGARVATFHGGHNAITGIQSVISINSIIGTKGVPNINPFDLKPGLTN SKLFARDRNVCAYCSGHFHEEDLTREHIIPFAQNGIDTWMNVVTACRACNHRKSSRTPEQAHMPLIYTPYVPSLWEDFIL RNRRILADQMEFLMAHIPKTSRLHA >Mature_185_residues MKVLKLSAQGLPQSWISLEEAVLHYAADEVRWEMGARVATFHGGHNAITGIQSVISINSIIGTKGVPNINPFDLKPGLTN SKLFARDRNVCAYCSGHFHEEDLTREHIIPFAQNGIDTWMNVVTACRACNHRKSSRTPEQAHMPLIYTPYVPSLWEDFIL RNRRILADQMEFLMAHIPKTSRLHA
Specific function: Unknown
COG id: COG1403
COG function: function code V; Restriction endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20916; Mature: 20916
Theoretical pI: Translated: 8.36; Mature: 8.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVLKLSAQGLPQSWISLEEAVLHYAADEVRWEMGARVATFHGGHNAITGIQSVISINSI CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHH IGTKGVPNINPFDLKPGLTNSKLFARDRNVCAYCSGHFHEEDLTREHIIPFAQNGIDTWM HCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEECCCCCCHHCCHHHCCCHHHCCHHHHH NVVTACRACNHRKSSRTPEQAHMPLIYTPYVPSLWEDFILRNRRILADQMEFLMAHIPKT HHHHHHHHHHCCCCCCCCHHHCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC SRLHA CCCCC >Mature Secondary Structure MKVLKLSAQGLPQSWISLEEAVLHYAADEVRWEMGARVATFHGGHNAITGIQSVISINSI CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHH IGTKGVPNINPFDLKPGLTNSKLFARDRNVCAYCSGHFHEEDLTREHIIPFAQNGIDTWM HCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEECCCCCCHHCCHHHCCCHHHCCHHHHH NVVTACRACNHRKSSRTPEQAHMPLIYTPYVPSLWEDFILRNRRILADQMEFLMAHIPKT HHHHHHHHHHCCCCCCCCHHHCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCC SRLHA CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA