| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789696
Identifier: 91789696
GI number: 91789696
Start: 4045195
End: 4046013
Strand: Reverse
Name: 91789696
Synonym: Bpro_3852
Alternate gene names: NA
Gene position: 4046013-4045195 (Counterclockwise)
Preceding gene: 91789697
Following gene: 91789691
Centisome position: 77.8
GC content: 67.52
Gene sequence:
>819_bases GTGAGCGGCCTGCGGGTCGATGCGGGCTGGCTGCGCGAGCTGCGCGCCAAAGCCGTTCAGCCACCCCTGCGGCCGCGCGT GCCGCTGTGGGCGGGCGAGTCGGTGATCGGCTCGGTGGAGCCTGAATTCCTGCATCAAATCACGCTTCAACCCCTGACGG ATGGACATCATCCGCTGTTAAAGGAGGAGCATCCGGAACGGCTCGGCTGGCGCCTGATGGGCGACGTGACGACCAGCCTG AACCGGGTGGCCCTTGCCCTGCTTGAAGCCGGCCTGGCGGGCGCCTGGCGCAATGAACAGCTGGCGGTGCCTGACCAGCT GGGCCATCGCAAGGGGACGGTGGAACGCGCCGCTGTCCGGCCGCTGGGCATCACCACGCTGGCCGTGCATCTGGTGGGGC AGACGCCGGACGGCCGCTTCTGGGTGCAGCAGCGCGCTTTTGACAAGGCCAACGACCCGGGCCAGTGGGACACGCTGATG GGTGGCATGGTGTCGGCGGCGGATACGGTAGAGACGGCGCTGGTGCGTGAAACCTGGGAAGAGGCCGGGCTGCATACGGC CGACCTGCAGGACATGCGCTACGGCGGGCGCCTGAGCACCTGCCGCCCCTGCAGCGACGGCATGGGGGCGGGTTATGTCA GCGAAAACATCGACTGGTACTGCTGCACCGTGCCCGAGCGGCTGGTGCCGAACAACCAGGACGGCGAGGTCGAGCAGTTT TGCCTGATGGACGCGGGGCAATTGCTGGACGTCCTGCAGCGGGGTGAGTTCACCACCGAAGCCGCGCTGATTCTCTGCGA TGTGCTGAAACTGCCCTGA
Upstream 100 bases:
>100_bases TCAGGATCGCCATTGACCAGCGGTTTCCGCTGGCCGATGTGGCCGAGGCGCACCGGTCGCTCGAAGCCCGCAAGACCACG GGCTGCACGATTCTTACCCT
Downstream 100 bases:
>100_bases TTTCCAGTCCGCAGGCCTGTCGGGAGGGCAGGTCCGGGCTTCAGGGCTGGTCGGTCAGCACCATGGGCCGCAGGCGGTTG GGTGCCAAGGCGCCGGCGGA
Product: NUDIX hydrolase
Products: NA
Alternate protein names: NUDIX Domain-Containing Protein; Nucleoside Diphosphate Hydrolase Protein; NTP Pyrophosphohydrolase; NUDIX Domain Family Protein; Nudix Hydrolase; NUDIX Domain-Containing; Thiamin Pyrophosphokinase; Hydrolase NUDIX Family
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MSGLRVDAGWLRELRAKAVQPPLRPRVPLWAGESVIGSVEPEFLHQITLQPLTDGHHPLLKEEHPERLGWRLMGDVTTSL NRVALALLEAGLAGAWRNEQLAVPDQLGHRKGTVERAAVRPLGITTLAVHLVGQTPDGRFWVQQRAFDKANDPGQWDTLM GGMVSAADTVETALVRETWEEAGLHTADLQDMRYGGRLSTCRPCSDGMGAGYVSENIDWYCCTVPERLVPNNQDGEVEQF CLMDAGQLLDVLQRGEFTTEAALILCDVLKLP
Sequences:
>Translated_272_residues MSGLRVDAGWLRELRAKAVQPPLRPRVPLWAGESVIGSVEPEFLHQITLQPLTDGHHPLLKEEHPERLGWRLMGDVTTSL NRVALALLEAGLAGAWRNEQLAVPDQLGHRKGTVERAAVRPLGITTLAVHLVGQTPDGRFWVQQRAFDKANDPGQWDTLM GGMVSAADTVETALVRETWEEAGLHTADLQDMRYGGRLSTCRPCSDGMGAGYVSENIDWYCCTVPERLVPNNQDGEVEQF CLMDAGQLLDVLQRGEFTTEAALILCDVLKLP >Mature_271_residues SGLRVDAGWLRELRAKAVQPPLRPRVPLWAGESVIGSVEPEFLHQITLQPLTDGHHPLLKEEHPERLGWRLMGDVTTSLN RVALALLEAGLAGAWRNEQLAVPDQLGHRKGTVERAAVRPLGITTLAVHLVGQTPDGRFWVQQRAFDKANDPGQWDTLMG GMVSAADTVETALVRETWEEAGLHTADLQDMRYGGRLSTCRPCSDGMGAGYVSENIDWYCCTVPERLVPNNQDGEVEQFC LMDAGQLLDVLQRGEFTTEAALILCDVLKLP
Specific function: Unknown
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6322602, Length=203, Percent_Identity=29.064039408867, Blast_Score=75, Evalue=8e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29992; Mature: 29860
Theoretical pI: Translated: 4.81; Mature: 4.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGLRVDAGWLRELRAKAVQPPLRPRVPLWAGESVIGSVEPEFLHQITLQPLTDGHHPLL CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCCCCC KEEHPERLGWRLMGDVTTSLNRVALALLEAGLAGAWRNEQLAVPDQLGHRKGTVERAAVR CCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHCC PLGITTLAVHLVGQTPDGRFWVQQRAFDKANDPGQWDTLMGGMVSAADTVETALVRETWE CCCHHEEEHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH EAGLHTADLQDMRYGGRLSTCRPCSDGMGAGYVSENIDWYCCTVPERLVPNNQDGEVEQF HHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHCCCCCCCCHHHH CLMDAGQLLDVLQRGEFTTEAALILCDVLKLP HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure SGLRVDAGWLRELRAKAVQPPLRPRVPLWAGESVIGSVEPEFLHQITLQPLTDGHHPLL CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCCCCC KEEHPERLGWRLMGDVTTSLNRVALALLEAGLAGAWRNEQLAVPDQLGHRKGTVERAAVR CCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHCC PLGITTLAVHLVGQTPDGRFWVQQRAFDKANDPGQWDTLMGGMVSAADTVETALVRETWE CCCHHEEEHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH EAGLHTADLQDMRYGGRLSTCRPCSDGMGAGYVSENIDWYCCTVPERLVPNNQDGEVEQF HHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHCCCCCCCCHHHH CLMDAGQLLDVLQRGEFTTEAALILCDVLKLP HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA