| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is purN [H]
Identifier: 91789687
GI number: 91789687
Start: 4034371
End: 4034970
Strand: Reverse
Name: purN [H]
Synonym: Bpro_3843
Alternate gene names: 91789687
Gene position: 4034970-4034371 (Counterclockwise)
Preceding gene: 91789691
Following gene: 91789686
Centisome position: 77.59
GC content: 64.17
Gene sequence:
>600_bases ATGGGAAGCAGTCCAAAGGACATCGTTATTTTGATCTCTGGCGGGGGCTCCAACATGGTGGCCATCACGAATGCAGCGCA AAAAGAGCGGTGGCAGGACACCCTCCATGCCCGCGTGGCCTGCGTCATCAGCAACAAGCCGGGTGCCGAGGGGCTGGCCA CCGCGGCCGGGCTGGGCATTGCGACCCAGGTGATTGATCACAAGCAATTTGACTCGCGCGATGCGTTTGACGCGGCGCTG CAGGGCGCTATTGATGCCTGCCAGCCCACGCTGGTGGTGCTGGCTGGCTTCATGCGCATATTGACGCCCGCTTTTGTGGC GCACTACGCCGGTCGGCTGGTCAATATCCATCCGTCCCTGCTGCCCGCCTTCCCCGGCCTCAACACCCATCAACGGGCCA TTGATGCGGGCTGCAAGGTGGCCGGTGCCACGGTGCACCTGGTCACTGCCGATCTTGACCACGGCCCCATTCTGGCCCAG GCGGTGGTGCCCATTCTTGCGGGAGACAGCGCGAACACGCTGGCCGCCCGCGTGCTGAGCCAGGAACACCTGATTTATCC GCGGGCAATCCGCGCGTTGCTGGAGCAGGCCGCTGGCTGA
Upstream 100 bases:
>100_bases GAGTGTGCCCAGCACGCGGGCTTCAATCGGGGTCAGGGTTCTGATGGTCATAAACTAGGGTGATATTTGAAAGAGGCACC AGAAGGTGATAAGAAACAAT
Downstream 100 bases:
>100_bases TGGGTGCTGATCGCTGATCGCTGAGCGCTGAGCGCTGAGCGCTGAGCCGGCACCGCGTCATGAACCCGGTGTGGCGTTCT TCTCCTGTCCGGCGGATTCG
Product: phosphoribosylglycinamide formyltransferase
Products: NA
Alternate protein names: 5'-phosphoribosylglycinamide transformylase; GAR transformylase; GART [H]
Number of amino acids: Translated: 199; Mature: 198
Protein sequence:
>199_residues MGSSPKDIVILISGGGSNMVAITNAAQKERWQDTLHARVACVISNKPGAEGLATAAGLGIATQVIDHKQFDSRDAFDAAL QGAIDACQPTLVVLAGFMRILTPAFVAHYAGRLVNIHPSLLPAFPGLNTHQRAIDAGCKVAGATVHLVTADLDHGPILAQ AVVPILAGDSANTLAARVLSQEHLIYPRAIRALLEQAAG
Sequences:
>Translated_199_residues MGSSPKDIVILISGGGSNMVAITNAAQKERWQDTLHARVACVISNKPGAEGLATAAGLGIATQVIDHKQFDSRDAFDAAL QGAIDACQPTLVVLAGFMRILTPAFVAHYAGRLVNIHPSLLPAFPGLNTHQRAIDAGCKVAGATVHLVTADLDHGPILAQ AVVPILAGDSANTLAARVLSQEHLIYPRAIRALLEQAAG >Mature_198_residues GSSPKDIVILISGGGSNMVAITNAAQKERWQDTLHARVACVISNKPGAEGLATAAGLGIATQVIDHKQFDSRDAFDAALQ GAIDACQPTLVVLAGFMRILTPAFVAHYAGRLVNIHPSLLPAFPGLNTHQRAIDAGCKVAGATVHLVTADLDHGPILAQA VVPILAGDSANTLAARVLSQEHLIYPRAIRALLEQAAG
Specific function: De novo purine biosynthesis; third step. [C]
COG id: COG0299
COG function: function code F; Folate-dependent phosphoribosylglycinamide formyltransferase PurN
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GART family [H]
Homologues:
Organism=Homo sapiens, GI4503915, Length=184, Percent_Identity=42.3913043478261, Blast_Score=152, Evalue=2e-37, Organism=Homo sapiens, GI209869995, Length=184, Percent_Identity=42.3913043478261, Blast_Score=152, Evalue=2e-37, Organism=Homo sapiens, GI209869993, Length=184, Percent_Identity=42.3913043478261, Blast_Score=152, Evalue=2e-37, Organism=Escherichia coli, GI1788846, Length=184, Percent_Identity=53.2608695652174, Blast_Score=190, Evalue=6e-50, Organism=Escherichia coli, GI1787483, Length=162, Percent_Identity=35.8024691358025, Blast_Score=101, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17567511, Length=186, Percent_Identity=38.7096774193548, Blast_Score=128, Evalue=2e-30, Organism=Saccharomyces cerevisiae, GI6320616, Length=213, Percent_Identity=27.6995305164319, Blast_Score=64, Evalue=1e-11, Organism=Drosophila melanogaster, GI24582400, Length=193, Percent_Identity=45.5958549222798, Blast_Score=165, Evalue=2e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002376 - InterPro: IPR001555 - InterPro: IPR004607 [H]
Pfam domain/function: PF00551 Formyl_trans_N [H]
EC number: =2.1.2.2 [H]
Molecular weight: Translated: 20646; Mature: 20515
Theoretical pI: Translated: 7.25; Mature: 7.25
Prosite motif: PS00373 GART
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSSPKDIVILISGGGSNMVAITNAAQKERWQDTLHARVACVISNKPGAEGLATAAGLGI CCCCCCEEEEEEECCCCCEEEEECHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHH ATQVIDHKQFDSRDAFDAALQGAIDACQPTLVVLAGFMRILTPAFVAHYAGRLVNIHPSL HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHH LPAFPGLNTHQRAIDAGCKVAGATVHLVTADLDHGPILAQAVVPILAGDSANTLAARVLS HHCCCCCCHHHHHHHHCCEECCCEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHH QEHLIYPRAIRALLEQAAG HHHCCCHHHHHHHHHHHCC >Mature Secondary Structure GSSPKDIVILISGGGSNMVAITNAAQKERWQDTLHARVACVISNKPGAEGLATAAGLGI CCCCCEEEEEEECCCCCEEEEECHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHH ATQVIDHKQFDSRDAFDAALQGAIDACQPTLVVLAGFMRILTPAFVAHYAGRLVNIHPSL HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHH LPAFPGLNTHQRAIDAGCKVAGATVHLVTADLDHGPILAQAVVPILAGDSANTLAARVLS HHCCCCCCHHHHHHHHCCEECCCEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHH QEHLIYPRAIRALLEQAAG HHHCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3301838; 9205837; 9278503; 10954745; 2204419; 1522592; 1631098; 9698564; 10606510 [H]