BacMap

Definition	Polaromonas sp. JS666 chromosome, complete genome.
Accession	NC_007948
Length	5,200,264

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The map label for this gene is livF [H]

Identifier: 91789682

GI number: 91789682

Start: 4029207

End: 4030037

Strand: Reverse

Name: livF [H]

Synonym: Bpro_3838

Alternate gene names: 91789682

Gene position: 4030037-4029207 (Counterclockwise)

Preceding gene: 91789683

Following gene: 91789681

Centisome position: 77.5

GC content: 60.65

Gene sequence:

>831_bases
ATGATGGAAAAAACCGTGGCAATCGACAGCAACGCCATTCTGGAAGTCAACAACATCGAGGTCGTCTACAACAAGGCGAT
TCAGGTGTTGCGCGGTCTGTCACTGGCAGTTCCACGTGGGCAAATCGTGGCCTTGCTCGGCAGCAATGGCGCCGGCAAGT
CCACCACACTGAAAGCCATTTCCAGCCTGCTGGCGCTGCAGGATGGGGAAATGACGCGCGGCGACATCCGCTTTGACAGC
CAGGACACGCGCGGCATCGCGCCGCACGCGCTGGTTCGTGCCGGCGTCTTCCATGTGATGGAAGGCCGGCATGTATTTGA
AGACCTCACCATCGAAGAAAACCTGGTGGCAGCCACCTATGCACTGACCGGGAAACGTGCGGGCAAGGCTGATTTCGACA
AGGTGTACGACTACTTTCCGCGCCTGCATGAACGCCGGCGCAGCCTGGCGGGTTACCTCTCTGGCGGTGAGCAGCAGATG
CTGGCGATTGGCCGGGCGCTGATTGCCGAGCCCAAGCTGATGCTGCTGGACGAGCCCTCGCTGGGCCTGTCGCCGGTGCT
GGTGGAGACCATTTTCGAGATCATCGCCCGCATCAATGCGGAGCGCGGCGTCTCCATGCTGCTGGTGGAACAAAACGCGT
CCATCGCACTGGCGGTGGCGCACTACGGCTACATCATGGAAACCGGCAAGGTGGTAATCGACAACAGCGCAGAGAAACTC
GCCGCCGACCCCGATGTGCGCGAGTTTTACCTCGGCGTTGGCAGCGAGGGCGGCGCCAGGAGCTTCAAGGATCTCAAGCA
TTACAAGCGCCGCAAGCGCTGGCTGTCATAA

Upstream 100 bases:

>100_bases
ACTCCATTCCCGTGGGCCGCATCTACCGGGCCGACTTCAAGCAGCAGAAGATGGTGCCGGCCTCCGAGTGGATCAGTCTG
CAGTAATAAATGACCACACC

Downstream 100 bases:

>100_bases
GCCCCCAGCACCGCACCAAACCACCGGACCTTCTTTCATGACTGAGATGACCTACACACTGACACTGCCCCAGATGCTGC
GAGAGCAGGCACAGCGCCGC

Product: ABC transporter-like protein

Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]

Alternate protein names: LIV-I protein F [H]

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MMEKTVAIDSNAILEVNNIEVVYNKAIQVLRGLSLAVPRGQIVALLGSNGAGKSTTLKAISSLLALQDGEMTRGDIRFDS
QDTRGIAPHALVRAGVFHVMEGRHVFEDLTIEENLVAATYALTGKRAGKADFDKVYDYFPRLHERRRSLAGYLSGGEQQM
LAIGRALIAEPKLMLLDEPSLGLSPVLVETIFEIIARINAERGVSMLLVEQNASIALAVAHYGYIMETGKVVIDNSAEKL
AADPDVREFYLGVGSEGGARSFKDLKHYKRRKRWLS

Sequences:

>Translated_276_residues
MMEKTVAIDSNAILEVNNIEVVYNKAIQVLRGLSLAVPRGQIVALLGSNGAGKSTTLKAISSLLALQDGEMTRGDIRFDS
QDTRGIAPHALVRAGVFHVMEGRHVFEDLTIEENLVAATYALTGKRAGKADFDKVYDYFPRLHERRRSLAGYLSGGEQQM
LAIGRALIAEPKLMLLDEPSLGLSPVLVETIFEIIARINAERGVSMLLVEQNASIALAVAHYGYIMETGKVVIDNSAEKL
AADPDVREFYLGVGSEGGARSFKDLKHYKRRKRWLS
>Mature_276_residues
MMEKTVAIDSNAILEVNNIEVVYNKAIQVLRGLSLAVPRGQIVALLGSNGAGKSTTLKAISSLLALQDGEMTRGDIRFDS
QDTRGIAPHALVRAGVFHVMEGRHVFEDLTIEENLVAATYALTGKRAGKADFDKVYDYFPRLHERRRSLAGYLSGGEQQM
LAIGRALIAEPKLMLLDEPSLGLSPVLVETIFEIIARINAERGVSMLLVEQNASIALAVAHYGYIMETGKVVIDNSAEKL
AADPDVREFYLGVGSEGGARSFKDLKHYKRRKRWLS

Specific function: Component of the leucine-specific transport system [H]

COG id: COG0410

COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9961252, Length=177, Percent_Identity=34.4632768361582, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI9961250, Length=177, Percent_Identity=34.4632768361582, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI4505771, Length=177, Percent_Identity=34.4632768361582, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI42741659, Length=177, Percent_Identity=35.0282485875706, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI148612844, Length=217, Percent_Identity=30.4147465437788, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI255708477, Length=217, Percent_Identity=30.4147465437788, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI116734710, Length=199, Percent_Identity=28.643216080402, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI153792144, Length=193, Percent_Identity=26.4248704663212, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI45446740, Length=199, Percent_Identity=27.6381909547739, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI47078218, Length=199, Percent_Identity=27.6381909547739, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI156105685, Length=234, Percent_Identity=30.3418803418803, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI27477115, Length=184, Percent_Identity=28.804347826087, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI21536376, Length=199, Percent_Identity=28.1407035175879, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI11967971, Length=259, Percent_Identity=24.7104247104247, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI105990541, Length=180, Percent_Identity=31.1111111111111, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI9955963, Length=194, Percent_Identity=29.8969072164948, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI21536378, Length=215, Percent_Identity=27.906976744186, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI6005701, Length=222, Percent_Identity=27.4774774774775, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI87082268, Length=244, Percent_Identity=44.672131147541, Blast_Score=191, Evalue=5e-50,
Organism=Escherichia coli, GI1789672, Length=245, Percent_Identity=30.2040816326531, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789864, Length=258, Percent_Identity=26.3565891472868, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789593, Length=244, Percent_Identity=31.1475409836066, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788225, Length=245, Percent_Identity=31.0204081632653, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787089, Length=238, Percent_Identity=29.8319327731092, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787029, Length=238, Percent_Identity=29.8319327731092, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786872, Length=234, Percent_Identity=30.7692307692308, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1786398, Length=243, Percent_Identity=26.3374485596708, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1788450, Length=266, Percent_Identity=27.8195488721804, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788761, Length=239, Percent_Identity=29.7071129707113, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789586, Length=242, Percent_Identity=28.099173553719, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786319, Length=242, Percent_Identity=30.9917355371901, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788506, Length=257, Percent_Identity=26.8482490272374, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790162, Length=250, Percent_Identity=26, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790190, Length=202, Percent_Identity=30.1980198019802, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081834, Length=212, Percent_Identity=28.7735849056604, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87081791, Length=248, Percent_Identity=27.4193548387097, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI87081709, Length=229, Percent_Identity=26.2008733624454, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI87081782, Length=195, Percent_Identity=30.2564102564103, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786253, Length=224, Percent_Identity=27.2321428571429, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787792, Length=241, Percent_Identity=26.1410788381743, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788644, Length=228, Percent_Identity=28.9473684210526, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1790467, Length=221, Percent_Identity=28.0542986425339, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787105, Length=213, Percent_Identity=28.6384976525822, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787712, Length=239, Percent_Identity=25.5230125523013, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786345, Length=216, Percent_Identity=26.3888888888889, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994997, Length=247, Percent_Identity=27.9352226720648, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790544, Length=253, Percent_Identity=24.1106719367589, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787370, Length=226, Percent_Identity=24.7787610619469, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994943, Length=205, Percent_Identity=25.8536585365854, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788897, Length=214, Percent_Identity=26.1682242990654, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787112, Length=202, Percent_Identity=30.6930693069307, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789873, Length=211, Percent_Identity=27.0142180094787, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI87082267, Length=173, Percent_Identity=27.7456647398844, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789891, Length=222, Percent_Identity=27.9279279279279, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789032, Length=228, Percent_Identity=25.8771929824561, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790525, Length=243, Percent_Identity=25.9259259259259, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789890, Length=235, Percent_Identity=27.6595744680851, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787143, Length=219, Percent_Identity=27.8538812785388, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786703, Length=215, Percent_Identity=26.046511627907, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786698, Length=204, Percent_Identity=25, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788210, Length=182, Percent_Identity=27.4725274725275, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786654, Length=177, Percent_Identity=29.3785310734463, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI145693107, Length=273, Percent_Identity=23.4432234432234, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787972, Length=185, Percent_Identity=30.8108108108108, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=232, Percent_Identity=29.7413793103448, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI71983523, Length=216, Percent_Identity=30.0925925925926, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17558664, Length=165, Percent_Identity=35.1515151515151, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71983516, Length=216, Percent_Identity=30.0925925925926, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71983510, Length=216, Percent_Identity=30.0925925925926, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71992285, Length=190, Percent_Identity=32.1052631578947, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17541710, Length=180, Percent_Identity=35.5555555555556, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI115533608, Length=208, Percent_Identity=30.2884615384615, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=189, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=246, Percent_Identity=29.2682926829268, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=246, Percent_Identity=29.2682926829268, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=246, Percent_Identity=29.2682926829268, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=226, Percent_Identity=30.0884955752212, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI193202349, Length=232, Percent_Identity=28.448275862069, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=216, Percent_Identity=30.5555555555556, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71984940, Length=160, Percent_Identity=32.5, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71996550, Length=232, Percent_Identity=28.448275862069, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17569143, Length=160, Percent_Identity=31.25, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI115535101, Length=201, Percent_Identity=32.3383084577114, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17567269, Length=198, Percent_Identity=29.7979797979798, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=227, Percent_Identity=27.7533039647577, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI85726357, Length=164, Percent_Identity=33.5365853658537, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI85725262, Length=214, Percent_Identity=28.0373831775701, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21357907, Length=194, Percent_Identity=31.4432989690722, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24659289, Length=228, Percent_Identity=32.0175438596491, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28574533, Length=217, Percent_Identity=24.4239631336406, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221512771, Length=177, Percent_Identity=28.8135593220339, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24582014, Length=172, Percent_Identity=31.9767441860465, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582012, Length=172, Percent_Identity=31.9767441860465, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24653245, Length=167, Percent_Identity=32.3353293413174, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI281363262, Length=167, Percent_Identity=32.3353293413174, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24666092, Length=208, Percent_Identity=26.9230769230769, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI85816269, Length=220, Percent_Identity=23.1818181818182, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24580553, Length=220, Percent_Identity=23.1818181818182, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI28574744, Length=224, Percent_Identity=24.5535714285714, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI85724864, Length=220, Percent_Identity=23.1818181818182, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24580555, Length=220, Percent_Identity=23.1818181818182, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 30270; Mature: 30270

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEKTVAIDSNAILEVNNIEVVYNKAIQVLRGLSLAVPRGQIVALLGSNGAGKSTTLKAI
CCCCEEEECCCCEEEECCCHHHHHHHHHHHHCCHHCCCCCEEEEEEECCCCCCHHHHHHH
SSLLALQDGEMTRGDIRFDSQDTRGIAPHALVRAGVFHVMEGRHVFEDLTIEENLVAATY
HHHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEHE
ALTGKRAGKADFDKVYDYFPRLHERRRSLAGYLSGGEQQMLAIGRALIAEPKLMLLDEPS
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCC
LGLSPVLVETIFEIIARINAERGVSMLLVEQNASIALAVAHYGYIMETGKVVIDNSAEKL
CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEHHHHHEECCEEEEECCHHHH
AADPDVREFYLGVGSEGGARSFKDLKHYKRRKRWLS
CCCCCHHHHEEECCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMEKTVAIDSNAILEVNNIEVVYNKAIQVLRGLSLAVPRGQIVALLGSNGAGKSTTLKAI
CCCCEEEECCCCEEEECCCHHHHHHHHHHHHCCHHCCCCCEEEEEEECCCCCCHHHHHHH
SSLLALQDGEMTRGDIRFDSQDTRGIAPHALVRAGVFHVMEGRHVFEDLTIEENLVAATY
HHHHHHCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEHE
ALTGKRAGKADFDKVYDYFPRLHERRRSLAGYLSGGEQQMLAIGRALIAEPKLMLLDEPS
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCC
LGLSPVLVETIFEIIARINAERGVSMLLVEQNASIALAVAHYGYIMETGKVVIDNSAEKL
CCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEHHHHHEECCEEEEECCHHHH
AADPDVREFYLGVGSEGGARSFKDLKHYKRRKRWLS
CCCCCHHHHEEECCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]

Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2195019; 8041620; 9278503 [H]