| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yrrI [H]
Identifier: 91789517
GI number: 91789517
Start: 3879100
End: 3880272
Strand: Reverse
Name: yrrI [H]
Synonym: Bpro_3669
Alternate gene names: 91789517
Gene position: 3880272-3879100 (Counterclockwise)
Preceding gene: 91789518
Following gene: 91789516
Centisome position: 74.62
GC content: 62.57
Gene sequence:
>1173_bases ATGACTGAAGAAGCCGCAAAAGATACGCCGCTTGCCGAGACGGAGGCGGCGCTTTTGCCGGAGCCGGAACGGCTGCTGCT GCACATGCCGGTAGACATCCGCAATGTCTCGCTGGTAATCCTGGCAGTGCTGGCCAGCCTGTTCATGCTCCATTGGGCCA AGGCGGTCTTCATTCCCCTCATGCTCGGTCTCCTCTTCAGCTATGCGCTGTCGCCCGTGGTCAATTGGCTGGAACTCAAA CGCGTGCCACGCTGGCTCAGTGCCGCGGTGCTGCTGCTGGCCATTCTGGGCGCGATCGGCTCGACTGCGTATTCGCTGCG CAATGAGGCTTCGCAACTGCTGGAGTCGTTGCCGCTGGCGGCACAAAAATTCAGGCAGGCGGTGAAAACGCGTGCCGGCA AGCCGGACGGCGCTCTGGAAAACGTGCAGAAAGCCGCCTCCCAGATCGAACAGGCGGCGCGTGAAAGTGGTACCGCCTCT CCCGGATCATCCCGGGGCGCCATGCGGGTCGTCGTTGAGACGGCAACGTTCAATGTGCGGGACTATCTGTGGACAGGAAC CCTCGGCCTGCTCACGCTGATAGGCCAGTTCACCGTGGTGGTTTTCCTGACCTACTTCCTGATGCTCTCCGGCGACACCT TCTGCCGCAAGCTGATCAAGCTGGCACCCGGCTTCAGCAGCAAGAAAATCACGCTGCAGGCCCTGCATGAGATCACCGGG CAGATCCAGCGCTACCTGCAGGTGCAGCTGCTGGCCAGTGCGTTGGTGGGGGTGCTGACCTGGCTGGCCCTGCTGATCAT CGGACTGGACAACGCGGCAGTGTGGGGCATTGCCGCCGGTGTGCTGAACCTCGTGCCTTATGTGGGTTCGCTGGTGACGG CGGGCGCGTCGGGGCTGGTGGGGTTTTTGCAGTTTGGTTCGCTCGACATGGCGATCGTGGTGGCCGGCGCCTCGCTGTTC ATCCACATGCTGGTGGGCAACCTGTTCACCCCCTGGCTCACCAGCCGCGCCAGCCGCCTGAGCCCGGTAGCGGTGTTTGT CGGGCTGCTGGCCTGGGGCTGGTTGTGGGGCGTGTGGGGCTTGTTGCTCGGCATACCCATTCTGATGATCGTCAAGTCCG TGTGCGACCGGATCGATGACCTGAAACCCATTGGCGAGTTTCTGGGCTCTTAG
Upstream 100 bases:
>100_bases GGCATAACGATGACGGGGGACTGCCCCACGCGGGTTTTTCGCGGGGTTTTGCTGGTACGACGGGCAAAGCCGGCAGCTGC GGGGTCCATGAGGAGCAACA
Downstream 100 bases:
>100_bases AAATGAGGCCCCCACGGTCGCTCACTGCGTGTAGCTCCCGAGGCCTTGCAGGCCGCGGCTCGCGAGACGCTTCGCCTCTG TCGCCCGTCCAAGCCTGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 390; Mature: 389
Protein sequence:
>390_residues MTEEAAKDTPLAETEAALLPEPERLLLHMPVDIRNVSLVILAVLASLFMLHWAKAVFIPLMLGLLFSYALSPVVNWLELK RVPRWLSAAVLLLAILGAIGSTAYSLRNEASQLLESLPLAAQKFRQAVKTRAGKPDGALENVQKAASQIEQAARESGTAS PGSSRGAMRVVVETATFNVRDYLWTGTLGLLTLIGQFTVVVFLTYFLMLSGDTFCRKLIKLAPGFSSKKITLQALHEITG QIQRYLQVQLLASALVGVLTWLALLIIGLDNAAVWGIAAGVLNLVPYVGSLVTAGASGLVGFLQFGSLDMAIVVAGASLF IHMLVGNLFTPWLTSRASRLSPVAVFVGLLAWGWLWGVWGLLLGIPILMIVKSVCDRIDDLKPIGEFLGS
Sequences:
>Translated_390_residues MTEEAAKDTPLAETEAALLPEPERLLLHMPVDIRNVSLVILAVLASLFMLHWAKAVFIPLMLGLLFSYALSPVVNWLELK RVPRWLSAAVLLLAILGAIGSTAYSLRNEASQLLESLPLAAQKFRQAVKTRAGKPDGALENVQKAASQIEQAARESGTAS PGSSRGAMRVVVETATFNVRDYLWTGTLGLLTLIGQFTVVVFLTYFLMLSGDTFCRKLIKLAPGFSSKKITLQALHEITG QIQRYLQVQLLASALVGVLTWLALLIIGLDNAAVWGIAAGVLNLVPYVGSLVTAGASGLVGFLQFGSLDMAIVVAGASLF IHMLVGNLFTPWLTSRASRLSPVAVFVGLLAWGWLWGVWGLLLGIPILMIVKSVCDRIDDLKPIGEFLGS >Mature_389_residues TEEAAKDTPLAETEAALLPEPERLLLHMPVDIRNVSLVILAVLASLFMLHWAKAVFIPLMLGLLFSYALSPVVNWLELKR VPRWLSAAVLLLAILGAIGSTAYSLRNEASQLLESLPLAAQKFRQAVKTRAGKPDGALENVQKAASQIEQAARESGTASP GSSRGAMRVVVETATFNVRDYLWTGTLGLLTLIGQFTVVVFLTYFLMLSGDTFCRKLIKLAPGFSSKKITLQALHEITGQ IQRYLQVQLLASALVGVLTWLALLIIGLDNAAVWGIAAGVLNLVPYVGSLVTAGASGLVGFLQFGSLDMAIVVAGASLFI HMLVGNLFTPWLTSRASRLSPVAVFVGLLAWGWLWGVWGLLLGIPILMIVKSVCDRIDDLKPIGEFLGS
Specific function: Unknown
COG id: COG0628
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0118 (perM) family [H]
Homologues:
Organism=Escherichia coli, GI87082271, Length=359, Percent_Identity=25.0696378830084, Blast_Score=98, Evalue=1e-21, Organism=Escherichia coli, GI1788838, Length=193, Percent_Identity=28.4974093264249, Blast_Score=85, Evalue=9e-18, Organism=Escherichia coli, GI1787885, Length=339, Percent_Identity=25.3687315634218, Blast_Score=79, Evalue=6e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002549 [H]
Pfam domain/function: PF01594 UPF0118 [H]
EC number: NA
Molecular weight: Translated: 41985; Mature: 41854
Theoretical pI: Translated: 9.36; Mature: 9.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEEAAKDTPLAETEAALLPEPERLLLHMPVDIRNVSLVILAVLASLFMLHWAKAVFIPL CCCCCCCCCCCCHHHHHHCCCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLGLLFSYALSPVVNWLELKRVPRWLSAAVLLLAILGAIGSTAYSLRNEASQLLESLPLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH AQKFRQAVKTRAGKPDGALENVQKAASQIEQAARESGTASPGSSRGAMRVVVETATFNVR HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHH DYLWTGTLGLLTLIGQFTVVVFLTYFLMLSGDTFCRKLIKLAPGFSSKKITLQALHEITG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH QIQRYLQVQLLASALVGVLTWLALLIIGLDNAAVWGIAAGVLNLVPYVGSLVTAGASGLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH GFLQFGSLDMAIVVAGASLFIHMLVGNLFTPWLTSRASRLSPVAVFVGLLAWGWLWGVWG HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLLGIPILMIVKSVCDRIDDLKPIGEFLGS HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TEEAAKDTPLAETEAALLPEPERLLLHMPVDIRNVSLVILAVLASLFMLHWAKAVFIPL CCCCCCCCCCCHHHHHHCCCHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLGLLFSYALSPVVNWLELKRVPRWLSAAVLLLAILGAIGSTAYSLRNEASQLLESLPLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH AQKFRQAVKTRAGKPDGALENVQKAASQIEQAARESGTASPGSSRGAMRVVVETATFNVR HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHH DYLWTGTLGLLTLIGQFTVVVFLTYFLMLSGDTFCRKLIKLAPGFSSKKITLQALHEITG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH QIQRYLQVQLLASALVGVLTWLALLIIGLDNAAVWGIAAGVLNLVPYVGSLVTAGASGLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH GFLQFGSLDMAIVVAGASLFIHMLVGNLFTPWLTSRASRLSPVAVFVGLLAWGWLWGVWG HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLLGIPILMIVKSVCDRIDDLKPIGEFLGS HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]