Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

Click here to switch to the map view.

The map label for this gene is 91789383

Identifier: 91789383

GI number: 91789383

Start: 3731459

End: 3732835

Strand: Reverse

Name: 91789383

Synonym: Bpro_3529

Alternate gene names: NA

Gene position: 3732835-3731459 (Counterclockwise)

Preceding gene: 91789384

Following gene: 91789382

Centisome position: 71.78

GC content: 59.99

Gene sequence:

>1377_bases
ATGAAGTTCAAACTACTTGCCACAGCGGCGTTCATGACCACGGCGCTTTTAGCCGGCGGCCATGCAGCAGCCCAGGAGAA
ACTCACCGTCTGGTGGGTCAAGGGCTTCTACAAGGCCGAAGACGATGCCCTGTTTGCGGCCATCAAGAAGTACGAAGACA
AGCACAAGGGTGTCAAGATCGAGCTTTCGCAATACCCGATTCAGGACATGATTCCGAAGACCGTGGCGGCGCTCGACTCG
GGCAACCCGCCCGACGTGGCTTATGCGGACGTCTATGACTTCCAGGTCACGGGCAAGTGGGCTTTCGACGGCAAGCTCGA
AGACATCAGCAGCGTGATCAATCCCATGCGCGCCAAGTTCGCGCCCAACACGGTCGAGACCGCCTTCCTGTACAACGACC
AGGCCAAGACGCGGGCGTACTACGCCTTCCCGATGAAGCAGCAGACCATGCACATCCAGTACTGGGCTGACATGCTGGCG
GAGGCCGGGTTCAAGGAGTCGGACATTCCGACGGCCTGGAAGGACTACTGGTCCTTCTGGTGCGACAAGGTGCAGCCGGC
CTATCGTCAGAAAAGCGGCAACCGCACTTTCGGCATCGGCCAGCCGCTGGGCGTGGATTCCAGCGACTCGTTCTACTCCT
TCCTCACGTTCATGGACGCCTATAACGTGAGCCTGGTCAGCGACAGCGGCAAGCTGCTGGTGGATGATCCCAAGGTGCGC
GCCGGCCTCATCGGCGCCCTGACCGATTACACCCAGATTTACGCCAGGGGCTGCACGCCACCGTCGTCGACCAGCTGGAA
AGACCCGGACAACAACGTCGCCTTCCACAACAAAACGACCGTCCTCACCCACAATGCGACCATCTCGATCGCGGCCAAAT
GGCTCGATGACATGAACAACGCCGCCTTGAAGCCCGAGGATCGGGAGATCGCGAAGAAGAACTACACGGAGCGCATCCGC
ACCGCCGGTTTCCCGAGCAAGCCCGATGGCAGCAAGATGGTCTATCGTGCCGCGATCAAGACCGGCGTGGTTTTCAGCCA
GGCCAAGAACAAGGCCCGCGCCAAGGAGTTTGTGGCCTTCCTGCTGCAGGATGAAAACCTCACGCCGTACGTCGAGGGCT
CGCTGGGCCGCTGGTTCCCGGTGATGAAGGCGGCGCAGCAGCGCCCGTTCTGGAAAGCCGATCCGCATCGCACAGCCGTG
TACAACCAGTTCACGGCCGGCACGGTGAATTTCGAGTTCACCAAGAACTACAAGTTCACCGTTCTCAACAACGAGAACGT
CTGGGCCAAGGCCGCGAACCGGGTTCTCAACGAGAAAGTGCCGGTTGACAAGGCGGTCGACGAAATGATCGCCCGCATCA
AGACCGTCGCGAACTAA

Upstream 100 bases:

>100_bases
TCCCGCCGCCGCCTGCCCCGCGTCCACCGACCTGCTTTGCCGTTGAAGGCGGCCTGATTCCCGTAAGCTTTTCCTCACCA
ACCAAAGAAGGAGACTGTCG

Downstream 100 bases:

>100_bases
GAGCCAAGTCTGTTCATCAAAGAAAGCCGCGCAACCGTTCCCCTCGCGGGAGCGGTTGCGCGAGGAGCGATGCCATGAGC
ACTATCACTGTAGACCAGGT

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: Sugar ABC Transporter Periplasmic Protein

Number of amino acids: Translated: 458; Mature: 458

Protein sequence:

>458_residues
MKFKLLATAAFMTTALLAGGHAAAQEKLTVWWVKGFYKAEDDALFAAIKKYEDKHKGVKIELSQYPIQDMIPKTVAALDS
GNPPDVAYADVYDFQVTGKWAFDGKLEDISSVINPMRAKFAPNTVETAFLYNDQAKTRAYYAFPMKQQTMHIQYWADMLA
EAGFKESDIPTAWKDYWSFWCDKVQPAYRQKSGNRTFGIGQPLGVDSSDSFYSFLTFMDAYNVSLVSDSGKLLVDDPKVR
AGLIGALTDYTQIYARGCTPPSSTSWKDPDNNVAFHNKTTVLTHNATISIAAKWLDDMNNAALKPEDREIAKKNYTERIR
TAGFPSKPDGSKMVYRAAIKTGVVFSQAKNKARAKEFVAFLLQDENLTPYVEGSLGRWFPVMKAAQQRPFWKADPHRTAV
YNQFTAGTVNFEFTKNYKFTVLNNENVWAKAANRVLNEKVPVDKAVDEMIARIKTVAN

Sequences:

>Translated_458_residues
MKFKLLATAAFMTTALLAGGHAAAQEKLTVWWVKGFYKAEDDALFAAIKKYEDKHKGVKIELSQYPIQDMIPKTVAALDS
GNPPDVAYADVYDFQVTGKWAFDGKLEDISSVINPMRAKFAPNTVETAFLYNDQAKTRAYYAFPMKQQTMHIQYWADMLA
EAGFKESDIPTAWKDYWSFWCDKVQPAYRQKSGNRTFGIGQPLGVDSSDSFYSFLTFMDAYNVSLVSDSGKLLVDDPKVR
AGLIGALTDYTQIYARGCTPPSSTSWKDPDNNVAFHNKTTVLTHNATISIAAKWLDDMNNAALKPEDREIAKKNYTERIR
TAGFPSKPDGSKMVYRAAIKTGVVFSQAKNKARAKEFVAFLLQDENLTPYVEGSLGRWFPVMKAAQQRPFWKADPHRTAV
YNQFTAGTVNFEFTKNYKFTVLNNENVWAKAANRVLNEKVPVDKAVDEMIARIKTVAN
>Mature_458_residues
MKFKLLATAAFMTTALLAGGHAAAQEKLTVWWVKGFYKAEDDALFAAIKKYEDKHKGVKIELSQYPIQDMIPKTVAALDS
GNPPDVAYADVYDFQVTGKWAFDGKLEDISSVINPMRAKFAPNTVETAFLYNDQAKTRAYYAFPMKQQTMHIQYWADMLA
EAGFKESDIPTAWKDYWSFWCDKVQPAYRQKSGNRTFGIGQPLGVDSSDSFYSFLTFMDAYNVSLVSDSGKLLVDDPKVR
AGLIGALTDYTQIYARGCTPPSSTSWKDPDNNVAFHNKTTVLTHNATISIAAKWLDDMNNAALKPEDREIAKKNYTERIR
TAGFPSKPDGSKMVYRAAIKTGVVFSQAKNKARAKEFVAFLLQDENLTPYVEGSLGRWFPVMKAAQQRPFWKADPHRTAV
YNQFTAGTVNFEFTKNYKFTVLNNENVWAKAANRVLNEKVPVDKAVDEMIARIKTVAN

Specific function: Unknown

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51510; Mature: 51510

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKLLATAAFMTTALLAGGHAAAQEKLTVWWVKGFYKAEDDALFAAIKKYEDKHKGVKI
CCEEEHHHHHHHHHHHHHCCCHHHCCCEEEEEEECEEECCCHHHHHHHHHHHHHHCCEEE
ELSQYPIQDMIPKTVAALDSGNPPDVAYADVYDFQVTGKWAFDGKLEDISSVINPMRAKF
EECCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHC
APNTVETAFLYNDQAKTRAYYAFPMKQQTMHIQYWADMLAEAGFKESDIPTAWKDYWSFW
CCCCEEEEEEECCCCCCEEEEEECCCCCEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
CDKVQPAYRQKSGNRTFGIGQPLGVDSSDSFYSFLTFMDAYNVSLVSDSGKLLVDDPKVR
HHHCCHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCEEEECCCHH
AGLIGALTDYTQIYARGCTPPSSTSWKDPDNNVAFHNKTTVLTHNATISIAAKWLDDMNN
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEEECCEEEEHHHHHHCCCC
AALKPEDREIAKKNYTERIRTAGFPSKPDGSKMVYRAAIKTGVVFSQAKNKARAKEFVAF
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLQDENLTPYVEGSLGRWFPVMKAAQQRPFWKADPHRTAVYNQFTAGTVNFEFTKNYKFT
HHCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHEECEECCEEEEEEECCEEEE
VLNNENVWAKAANRVLNEKVPVDKAVDEMIARIKTVAN
EECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKFKLLATAAFMTTALLAGGHAAAQEKLTVWWVKGFYKAEDDALFAAIKKYEDKHKGVKI
CCEEEHHHHHHHHHHHHHCCCHHHCCCEEEEEEECEEECCCHHHHHHHHHHHHHHCCEEE
ELSQYPIQDMIPKTVAALDSGNPPDVAYADVYDFQVTGKWAFDGKLEDISSVINPMRAKF
EECCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHC
APNTVETAFLYNDQAKTRAYYAFPMKQQTMHIQYWADMLAEAGFKESDIPTAWKDYWSFW
CCCCEEEEEEECCCCCCEEEEEECCCCCEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
CDKVQPAYRQKSGNRTFGIGQPLGVDSSDSFYSFLTFMDAYNVSLVSDSGKLLVDDPKVR
HHHCCHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCEEEECCCHH
AGLIGALTDYTQIYARGCTPPSSTSWKDPDNNVAFHNKTTVLTHNATISIAAKWLDDMNN
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEEECCEEEEHHHHHHCCCC
AALKPEDREIAKKNYTERIRTAGFPSKPDGSKMVYRAAIKTGVVFSQAKNKARAKEFVAF
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLQDENLTPYVEGSLGRWFPVMKAAQQRPFWKADPHRTAVYNQFTAGTVNFEFTKNYKFT
HHCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHEECEECCEEEEEEECCEEEE
VLNNENVWAKAANRVLNEKVPVDKAVDEMIARIKTVAN
EECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA