| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is pdtaS [H]
Identifier: 91789363
GI number: 91789363
Start: 3710257
End: 3711576
Strand: Direct
Name: pdtaS [H]
Synonym: Bpro_3509
Alternate gene names: 91789363
Gene position: 3710257-3711576 (Clockwise)
Preceding gene: 91789362
Following gene: 91789364
Centisome position: 71.35
GC content: 61.21
Gene sequence:
>1320_bases ATGCCGGCGAACATGGCGCACAGCGTGGACACCGAGCAGCCGTTCAGTACCGCCGACTATGCGAAGGCGGTTCTCAATAT TCTTGAAGACGCCGCCGCCGAAAGGACACGTTTGAAAGACACACAGCGGGCGGTGATCAACATCCTGGAGGATGCGGCCG GCGAACGATCGTTGCTGGAGATGACGCAAAAGGCCGTTCTCAACATACTGGACGATTCCGGTACCGAGAAGCTGCGCCTT GAAGAGATGCAGAAAGCGGTGCTTAATATCCTTGACGATCTGGCGGGCGAGATGGGCGAGCGCACGCGCCTGGAGGCGCA GTTCCGTCTGCTGGAAACCTCGCCGGATGCGATCGTCATCGTCAATGAGGCGGGCCGCATAGTCCTGCTGAACGCGCAAA CGGAAAAGCTGTTCGGCTACGCGCGCAGCGAGCTGCTGGGCCAGATGGTCGAGATGCTGTTGCCGGAACGCTTCCGGGCG CGCCACCCTCAGCAGCGGATGGATTTTGGCGCCGACCCGCGAGTCCGCACGATGGGTGCCGAACTGGATTTGTATGGGCT GCGCAAGGACAGTACCGAGTTTCCGGTTGAAATCCTCCTCAGCCCGGTGCAGACGGATGAGGGCGTCCTGATCTCTGCGG CCATTCGCGACGTCTCGCGCACCAAGGACATCGAGCACCAGATCCGCACCTCGCTGAAGGAAAAGGAGGCGCTGCTGCAG GAGATTCACCACCGGGTGAAAAACAACCTGCAGATCATCGCCAGTCTGCTCTCGCTGCAATCGGGCTACATCCGCGATCC GCGGACGCTCATGCAGTTCCAGGAAAGCCAGGGGCGCATCCGTTCCATGGCCCTCATCCATGAAAAGCTTTACCAGTCGG AGACGCTGGCGACGGTCGATCTGGCGGACTACGTGCAGACCCTGGTGAGTATTCTCATGCGCACCTACACCGCCAATGCC AAGGTGAAATTGGAATGCCGGCTCGATCCGGCGACGGTGAACATCGATACCGCGGTGCCGGTGGGGTTGATGCTCAACGA ACTCGTGACCAACGCACTCAAGTACGCGTTCCCCAACAGCCGTCCGGGGCGCCTGCTGGTGACGCTCGACGCGGTCGCGG ACGGCGGGTTCGTGCTGGGCGTGCACGACGACGGCGTCGGGCTGGCGCCAGACTTTCAGCTGGAGCAGGCCAACACGCTG GGCCTGCGACTGGTCAGGATGTTCACCAAACAATTACGCGCCAACGTGACACTGCAATCCGGGTCCGGTCACACCGGATT CGACATTCAATTCAAGGAGGCGGCGGCAAGGTCGCCATGA
Upstream 100 bases:
>100_bases GGAGCGTTTCCAGCGGCTTACCGTCGGACGGGAGCTCAAGATGATCGAGCTCAAGAAGGAGATTGAAGAACTCAAGAAAA CCGGGGCCAGGTGACAGACT
Downstream 100 bases:
>100_bases CCGACCATGGAACAAGTGCTGAACAAAATTCGTGTCCTCGTCGTGGAGGATGAAATCGTCGTATCGGAAGACCTGCAGCA ACGGCTGTCGGGGCTCGGGT
Product: signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 439; Mature: 438
Protein sequence:
>439_residues MPANMAHSVDTEQPFSTADYAKAVLNILEDAAAERTRLKDTQRAVINILEDAAGERSLLEMTQKAVLNILDDSGTEKLRL EEMQKAVLNILDDLAGEMGERTRLEAQFRLLETSPDAIVIVNEAGRIVLLNAQTEKLFGYARSELLGQMVEMLLPERFRA RHPQQRMDFGADPRVRTMGAELDLYGLRKDSTEFPVEILLSPVQTDEGVLISAAIRDVSRTKDIEHQIRTSLKEKEALLQ EIHHRVKNNLQIIASLLSLQSGYIRDPRTLMQFQESQGRIRSMALIHEKLYQSETLATVDLADYVQTLVSILMRTYTANA KVKLECRLDPATVNIDTAVPVGLMLNELVTNALKYAFPNSRPGRLLVTLDAVADGGFVLGVHDDGVGLAPDFQLEQANTL GLRLVRMFTKQLRANVTLQSGSGHTGFDIQFKEAAARSP
Sequences:
>Translated_439_residues MPANMAHSVDTEQPFSTADYAKAVLNILEDAAAERTRLKDTQRAVINILEDAAGERSLLEMTQKAVLNILDDSGTEKLRL EEMQKAVLNILDDLAGEMGERTRLEAQFRLLETSPDAIVIVNEAGRIVLLNAQTEKLFGYARSELLGQMVEMLLPERFRA RHPQQRMDFGADPRVRTMGAELDLYGLRKDSTEFPVEILLSPVQTDEGVLISAAIRDVSRTKDIEHQIRTSLKEKEALLQ EIHHRVKNNLQIIASLLSLQSGYIRDPRTLMQFQESQGRIRSMALIHEKLYQSETLATVDLADYVQTLVSILMRTYTANA KVKLECRLDPATVNIDTAVPVGLMLNELVTNALKYAFPNSRPGRLLVTLDAVADGGFVLGVHDDGVGLAPDFQLEQANTL GLRLVRMFTKQLRANVTLQSGSGHTGFDIQFKEAAARSP >Mature_438_residues PANMAHSVDTEQPFSTADYAKAVLNILEDAAAERTRLKDTQRAVINILEDAAGERSLLEMTQKAVLNILDDSGTEKLRLE EMQKAVLNILDDLAGEMGERTRLEAQFRLLETSPDAIVIVNEAGRIVLLNAQTEKLFGYARSELLGQMVEMLLPERFRAR HPQQRMDFGADPRVRTMGAELDLYGLRKDSTEFPVEILLSPVQTDEGVLISAAIRDVSRTKDIEHQIRTSLKEKEALLQE IHHRVKNNLQIIASLLSLQSGYIRDPRTLMQFQESQGRIRSMALIHEKLYQSETLATVDLADYVQTLVSILMRTYTANAK VKLECRLDPATVNIDTAVPVGLMLNELVTNALKYAFPNSRPGRLLVTLDAVADGGFVLGVHDDGVGLAPDFQLEQANTLG LRLVRMFTKQLRANVTLQSGSGHTGFDIQFKEAAARSP
Specific function: Member of the two-component regulatory system pdtaR/pdtaS. Autophosphorylates, probably on a histidine residue, and transfers its phosphate group to pdtaR [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI87081921, Length=114, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR022066 - InterPro: IPR011495 - InterPro: IPR005467 [H]
Pfam domain/function: PF12282 H_kinase_N; PF02518 HATPase_c; PF07568 HisKA_2 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 48874; Mature: 48743
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPANMAHSVDTEQPFSTADYAKAVLNILEDAAAERTRLKDTQRAVINILEDAAGERSLLE CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH MTQKAVLNILDDSGTEKLRLEEMQKAVLNILDDLAGEMGERTRLEAQFRLLETSPDAIVI HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEECCCCEEEE VNEAGRIVLLNAQTEKLFGYARSELLGQMVEMLLPERFRARHPQQRMDFGADPRVRTMGA ECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHCCCCCCCCEEEECC ELDLYGLRKDSTEFPVEILLSPVQTDEGVLISAAIRDVSRTKDIEHQIRTSLKEKEALLQ CEEEEECCCCCCCCCHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EIHHRVKNNLQIIASLLSLQSGYIRDPRTLMQFQESQGRIRSMALIHEKLYQSETLATVD HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHH LADYVQTLVSILMRTYTANAKVKLECRLDPATVNIDTAVPVGLMLNELVTNALKYAFPNS HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHCCCCC RPGRLLVTLDAVADGGFVLGVHDDGVGLAPDFQLEQANTLGLRLVRMFTKQLRANVTLQS CCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEC GSGHTGFDIQFKEAAARSP CCCCCCCEEEEHHHCCCCC >Mature Secondary Structure PANMAHSVDTEQPFSTADYAKAVLNILEDAAAERTRLKDTQRAVINILEDAAGERSLLE CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH MTQKAVLNILDDSGTEKLRLEEMQKAVLNILDDLAGEMGERTRLEAQFRLLETSPDAIVI HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEECCCCEEEE VNEAGRIVLLNAQTEKLFGYARSELLGQMVEMLLPERFRARHPQQRMDFGADPRVRTMGA ECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHCCCCCCCCEEEECC ELDLYGLRKDSTEFPVEILLSPVQTDEGVLISAAIRDVSRTKDIEHQIRTSLKEKEALLQ CEEEEECCCCCCCCCHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EIHHRVKNNLQIIASLLSLQSGYIRDPRTLMQFQESQGRIRSMALIHEKLYQSETLATVD HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHH LADYVQTLVSILMRTYTANAKVKLECRLDPATVNIDTAVPVGLMLNELVTNALKYAFPNS HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHCCCCC RPGRLLVTLDAVADGGFVLGVHDDGVGLAPDFQLEQANTLGLRLVRMFTKQLRANVTLQS CCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEC GSGHTGFDIQFKEAAARSP CCCCCCCEEEEHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]