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The map label for this gene is yhjC [H]

Identifier: 91789286

GI number: 91789286

Start: 3632653

End: 3633582

Strand: Direct

Name: yhjC [H]

Synonym: Bpro_3431

Alternate gene names: 91789286

Gene position: 3632653-3633582 (Clockwise)

Preceding gene: 91789279

Following gene: 91789289

Centisome position: 69.86

GC content: 63.12

Gene sequence:

>930_bases
ATGGACAAGTTTTCAGCAATGCAGGCCTTCGTCAGGGTGGTGGAAGCCGGCACCTTCACCAAGGCCGCCGACTCCATGGC
CATGCCCAAACCGACGATCACGCGCCTGATCCAGACCCTGGAAAAGGAACTGGACACCAAGCTGCTGAACCGCACCACCC
GCAAGGTCACGGTGACGGCCGACGGCGCGGCCTACTACGAACGCGCCGGCCGCCTGCTCAGTGAGATGGAAGAACTCGAG
GCGAGCATGTCGCGCGCCAAGGCCAGCCCGCGCGGGCGGCTCAAGGTGGACATTCCGGCCTCGCTGGGCATCGCGGTCAT
CATTCCGGCCCTGCCCGATTTTTATGCGCGCTATCCCGACATCCAGCTCGACCTGGGCGTAAGCGACCGGCCTGTAGACA
TCATTGCCGAGAACGTTGACTGCGTGGTACGCGGCGGCGAACTGATCGACCAGTCGCTGGTCGCGCGCCGCATTGGGGAG
TTCTATCTGATGTCATGCGCCTCGCCCGCCTACCTCAAGCGCCATGGCACACCCCAGCATCCGGCCGAACTCGAGGACAG
CCATCGCATGATCCGTTACGCCTCTCCACGCAACGGCAAGCTTTATTCGTTCGAGTACTACAAGGACGGCGAAACCGTCG
AAGTCGGCGGCAACTATCTGCTGTCGGTCAACGATTCGCGCGCCGGCGTGGTCGCCGCGCTGGCCGGCCTGGGTGTGCTG
CACACCGCGACCTTTCAGGTGCAGGATTACATCAGCACAGGCGCGCTCGAACCGCTGTTCAACGGCTGGTGCACCGAATC
GATCCCGCTGCATGTGGTCTACCCGCCCAACCGCCACCTGAGCAACAAGGTGCGTGTCTTCGTGGACTGGGTCGCCGAGC
TGTTTGCCAAGCATGACCTGATACAGCGCAAGAGCACGCTGCCTGCCTGA

Upstream 100 bases:

>100_bases
CGATGGCCCTGACCGCTCCAGCACCGGGGACAGGTTGGGCCTGTCTCGATGGCAGGACGGGATGTATTTGATTGACTGAC
GCCCACAGACAGGACTTTTC

Downstream 100 bases:

>100_bases
TTGATGCGCCGGGGTAGCTGCAATGCACACTGGCGGCCTGGCTAACCACGGCCTGACGCAGACGACACCATTGCGCGGCA
GTGCCCCCGCCGACGCAGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MDKFSAMQAFVRVVEAGTFTKAADSMAMPKPTITRLIQTLEKELDTKLLNRTTRKVTVTADGAAYYERAGRLLSEMEELE
ASMSRAKASPRGRLKVDIPASLGIAVIIPALPDFYARYPDIQLDLGVSDRPVDIIAENVDCVVRGGELIDQSLVARRIGE
FYLMSCASPAYLKRHGTPQHPAELEDSHRMIRYASPRNGKLYSFEYYKDGETVEVGGNYLLSVNDSRAGVVAALAGLGVL
HTATFQVQDYISTGALEPLFNGWCTESIPLHVVYPPNRHLSNKVRVFVDWVAELFAKHDLIQRKSTLPA

Sequences:

>Translated_309_residues
MDKFSAMQAFVRVVEAGTFTKAADSMAMPKPTITRLIQTLEKELDTKLLNRTTRKVTVTADGAAYYERAGRLLSEMEELE
ASMSRAKASPRGRLKVDIPASLGIAVIIPALPDFYARYPDIQLDLGVSDRPVDIIAENVDCVVRGGELIDQSLVARRIGE
FYLMSCASPAYLKRHGTPQHPAELEDSHRMIRYASPRNGKLYSFEYYKDGETVEVGGNYLLSVNDSRAGVVAALAGLGVL
HTATFQVQDYISTGALEPLFNGWCTESIPLHVVYPPNRHLSNKVRVFVDWVAELFAKHDLIQRKSTLPA
>Mature_309_residues
MDKFSAMQAFVRVVEAGTFTKAADSMAMPKPTITRLIQTLEKELDTKLLNRTTRKVTVTADGAAYYERAGRLLSEMEELE
ASMSRAKASPRGRLKVDIPASLGIAVIIPALPDFYARYPDIQLDLGVSDRPVDIIAENVDCVVRGGELIDQSLVARRIGE
FYLMSCASPAYLKRHGTPQHPAELEDSHRMIRYASPRNGKLYSFEYYKDGETVEVGGNYLLSVNDSRAGVVAALAGLGVL
HTATFQVQDYISTGALEPLFNGWCTESIPLHVVYPPNRHLSNKVRVFVDWVAELFAKHDLIQRKSTLPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=37.5838926174497, Blast_Score=221, Evalue=5e-59,
Organism=Escherichia coli, GI1786401, Length=285, Percent_Identity=30.5263157894737, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=30.5555555555556, Blast_Score=148, Evalue=6e-37,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=29.4314381270903, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=26.5734265734266, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=27.7397260273973, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=26.2975778546713, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1789173, Length=288, Percent_Identity=24.3055555555556, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786448, Length=290, Percent_Identity=23.7931034482759, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=31.8965517241379, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788706, Length=302, Percent_Identity=22.8476821192053, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI145693105, Length=168, Percent_Identity=25, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788297, Length=120, Percent_Identity=28.3333333333333, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34249; Mature: 34249

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKFSAMQAFVRVVEAGTFTKAADSMAMPKPTITRLIQTLEKELDTKLLNRTTRKVTVTA
CCHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
DGAAYYERAGRLLSEMEELEASMSRAKASPRGRLKVDIPASLGIAVIIPALPDFYARYPD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCCHHHHHCCC
IQLDLGVSDRPVDIIAENVDCVVRGGELIDQSLVARRIGEFYLMSCASPAYLKRHGTPQH
EEEECCCCCCCHHHEECCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC
PAELEDSHRMIRYASPRNGKLYSFEYYKDGETVEVGGNYLLSVNDSRAGVVAALAGLGVL
CCCCCCCCCEEEECCCCCCCEEEEEEECCCCEEEECCCEEEEECCCCHHHHHHHHHHHHH
HTATFQVQDYISTGALEPLFNGWCTESIPLHVVYPPNRHLSNKVRVFVDWVAELFAKHDL
HHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
IQRKSTLPA
HHHHCCCCC
>Mature Secondary Structure
MDKFSAMQAFVRVVEAGTFTKAADSMAMPKPTITRLIQTLEKELDTKLLNRTTRKVTVTA
CCHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
DGAAYYERAGRLLSEMEELEASMSRAKASPRGRLKVDIPASLGIAVIIPALPDFYARYPD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCCHHHHHCCC
IQLDLGVSDRPVDIIAENVDCVVRGGELIDQSLVARRIGEFYLMSCASPAYLKRHGTPQH
EEEECCCCCCCHHHEECCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCC
PAELEDSHRMIRYASPRNGKLYSFEYYKDGETVEVGGNYLLSVNDSRAGVVAALAGLGVL
CCCCCCCCCEEEECCCCCCCEEEEEEECCCCEEEECCCEEEEECCCCHHHHHHHHHHHHH
HTATFQVQDYISTGALEPLFNGWCTESIPLHVVYPPNRHLSNKVRVFVDWVAELFAKHDL
HHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
IQRKSTLPA
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]