Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

Click here to switch to the map view.

The map label for this gene is 91788976

Identifier: 91788976

GI number: 91788976

Start: 3289637

End: 3290632

Strand: Direct

Name: 91788976

Synonym: Bpro_3116

Alternate gene names: NA

Gene position: 3289637-3290632 (Clockwise)

Preceding gene: 91788975

Following gene: 91788977

Centisome position: 63.26

GC content: 61.35

Gene sequence:

>996_bases
ATGCAAACACGTCGCAATTTCATTCAGACCTCGGCGGCGCTCGCCGCAGCGACCGCCGGCCTCGCGCCTTTTTCTGCCTT
CGCGCAGGCGCTGGAGCAGGTCAAGATTCTTTACGGCTTTCCGGCCGGCAGCTCAGGCGACATTTGCGCGCGCCGCGTGG
GCGACAGGCTCGGCGGTACCGCTTACGCCAAAAACAACGCGATCGTGGACACCAAGGCCGGCGCCGGCGGCCGCATTGCG
CTGGAAGGGCTCAAGATGGCCGCGGCGGACGGGTCTGTGTTGGCGATGACACCGTTCTCATGCATGTCGCTGTATCCGCA
CATCTACAAAAAACTGGCTTATGACCCGTTCAAGGACTTTGTACCCGTGGGCACCGCCTCCGTGATGCACCATGGCCTGG
CTGTCGGGCCCCTTGTGCCAGGCTCGGTCAAGAACGTCCAGGACTTTCTCGCATGGGCCAAGGCCAACCCGAAAGACGCC
AGCTATGGCTCGCCCGCGGCCGGTTCAACCCCTCATTTCATTGGTGCCTTGCTGGGCATGAACAACAACGTTGAACTCAA
GCACGTACCCTACCGTGGGTCGGTGCCCGGCGTGACCGATGTTGTCGGCGGACAGCTCGCCGCGATGGTCACACCGCACG
GCGATTTCATTCCCAACCACAAGGCCGGCAAGCTGCGCATCCTGGCAACCTCCGGAAAACAGCGTTCGCCGTTCGTACCC
GAAGTCGCAACCTTCGCCGAGCAGGGCTTTGCCGACCTGACCGTTGAAGAGTGGTTCGGCTTTTACGCGCCTGCGAAAAC
CCCCGCAGCCGTTATTGCGGCAGCCAACGCCGCGATCAACGCCGCGATCAAGGACAAATCTGTCATTGATTCGTTGACGG
TGGTGGGGCTGATCCCGTTTGGTGGCAGCGCCGAAGACATGGCACGCAGCCAAAAAATTGAGTTCGACCGCTGGGGTCCG
CTGATCAAGAAAATCGGTTTCACCGCCGAATCCTGA

Upstream 100 bases:

>100_bases
AGACCCTTGGGCTCTCAGCCGAGTCTTGATGCGCTTGCCTTCCACTGGTCCATTCGCTTCCCTCGCTTTCCCCGCCTACC
TAACTACAAGGAGACATTTC

Downstream 100 bases:

>100_bases
TCTCTGACTGATGCCTGAATGATGTCTAGCAGACGAGTCGCAGTGGCGATCCATGCACTACCAGCCCTCGCATCATCAGG
CGTCTGCGACCAGCTTTCAC

Product: twin-arginine translocation pathway signal protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MQTRRNFIQTSAALAAATAGLAPFSAFAQALEQVKILYGFPAGSSGDICARRVGDRLGGTAYAKNNAIVDTKAGAGGRIA
LEGLKMAAADGSVLAMTPFSCMSLYPHIYKKLAYDPFKDFVPVGTASVMHHGLAVGPLVPGSVKNVQDFLAWAKANPKDA
SYGSPAAGSTPHFIGALLGMNNNVELKHVPYRGSVPGVTDVVGGQLAAMVTPHGDFIPNHKAGKLRILATSGKQRSPFVP
EVATFAEQGFADLTVEEWFGFYAPAKTPAAVIAAANAAINAAIKDKSVIDSLTVVGLIPFGGSAEDMARSQKIEFDRWGP
LIKKIGFTAES

Sequences:

>Translated_331_residues
MQTRRNFIQTSAALAAATAGLAPFSAFAQALEQVKILYGFPAGSSGDICARRVGDRLGGTAYAKNNAIVDTKAGAGGRIA
LEGLKMAAADGSVLAMTPFSCMSLYPHIYKKLAYDPFKDFVPVGTASVMHHGLAVGPLVPGSVKNVQDFLAWAKANPKDA
SYGSPAAGSTPHFIGALLGMNNNVELKHVPYRGSVPGVTDVVGGQLAAMVTPHGDFIPNHKAGKLRILATSGKQRSPFVP
EVATFAEQGFADLTVEEWFGFYAPAKTPAAVIAAANAAINAAIKDKSVIDSLTVVGLIPFGGSAEDMARSQKIEFDRWGP
LIKKIGFTAES
>Mature_331_residues
MQTRRNFIQTSAALAAATAGLAPFSAFAQALEQVKILYGFPAGSSGDICARRVGDRLGGTAYAKNNAIVDTKAGAGGRIA
LEGLKMAAADGSVLAMTPFSCMSLYPHIYKKLAYDPFKDFVPVGTASVMHHGLAVGPLVPGSVKNVQDFLAWAKANPKDA
SYGSPAAGSTPHFIGALLGMNNNVELKHVPYRGSVPGVTDVVGGQLAAMVTPHGDFIPNHKAGKLRILATSGKQRSPFVP
EVATFAEQGFADLTVEEWFGFYAPAKTPAAVIAAANAAINAAIKDKSVIDSLTVVGLIPFGGSAEDMARSQKIEFDRWGP
LIKKIGFTAES

Specific function: Unknown

COG id: COG3181

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0065 (bug) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005064 [H]

Pfam domain/function: PF03401 Bug [H]

EC number: NA

Molecular weight: Translated: 34565; Mature: 34565

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTRRNFIQTSAALAAATAGLAPFSAFAQALEQVKILYGFPAGSSGDICARRVGDRLGGT
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHCCC
AYAKNNAIVDTKAGAGGRIALEGLKMAAADGSVLAMTPFSCMSLYPHIYKKLAYDPFKDF
EEECCCEEEECCCCCCCEEEEECEEEECCCCCEEEECCHHHHHHHHHHHHHHCCCCHHHH
VPVGTASVMHHGLAVGPLVPGSVKNVQDFLAWAKANPKDASYGSPAAGSTPHFIGALLGM
CCCCHHHHHHCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCC
NNNVELKHVPYRGSVPGVTDVVGGQLAAMVTPHGDFIPNHKAGKLRILATSGKQRSPFVP
CCCEEEEECCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCC
EVATFAEQGFADLTVEEWFGFYAPAKTPAAVIAAANAAINAAIKDKSVIDSLTVVGLIPF
HHHHHHHCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHEEEEEEECC
GGSAEDMARSQKIEFDRWGPLIKKIGFTAES
CCCHHHHHHHHCCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQTRRNFIQTSAALAAATAGLAPFSAFAQALEQVKILYGFPAGSSGDICARRVGDRLGGT
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHCCC
AYAKNNAIVDTKAGAGGRIALEGLKMAAADGSVLAMTPFSCMSLYPHIYKKLAYDPFKDF
EEECCCEEEECCCCCCCEEEEECEEEECCCCCEEEECCHHHHHHHHHHHHHHCCCCHHHH
VPVGTASVMHHGLAVGPLVPGSVKNVQDFLAWAKANPKDASYGSPAAGSTPHFIGALLGM
CCCCHHHHHHCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCC
NNNVELKHVPYRGSVPGVTDVVGGQLAAMVTPHGDFIPNHKAGKLRILATSGKQRSPFVP
CCCEEEEECCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCC
EVATFAEQGFADLTVEEWFGFYAPAKTPAAVIAAANAAINAAIKDKSVIDSLTVVGLIPF
HHHHHHHCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHEEEEEEECC
GGSAEDMARSQKIEFDRWGPLIKKIGFTAES
CCCHHHHHHHHCCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2013566 [H]