| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91788976
Identifier: 91788976
GI number: 91788976
Start: 3289637
End: 3290632
Strand: Direct
Name: 91788976
Synonym: Bpro_3116
Alternate gene names: NA
Gene position: 3289637-3290632 (Clockwise)
Preceding gene: 91788975
Following gene: 91788977
Centisome position: 63.26
GC content: 61.35
Gene sequence:
>996_bases ATGCAAACACGTCGCAATTTCATTCAGACCTCGGCGGCGCTCGCCGCAGCGACCGCCGGCCTCGCGCCTTTTTCTGCCTT CGCGCAGGCGCTGGAGCAGGTCAAGATTCTTTACGGCTTTCCGGCCGGCAGCTCAGGCGACATTTGCGCGCGCCGCGTGG GCGACAGGCTCGGCGGTACCGCTTACGCCAAAAACAACGCGATCGTGGACACCAAGGCCGGCGCCGGCGGCCGCATTGCG CTGGAAGGGCTCAAGATGGCCGCGGCGGACGGGTCTGTGTTGGCGATGACACCGTTCTCATGCATGTCGCTGTATCCGCA CATCTACAAAAAACTGGCTTATGACCCGTTCAAGGACTTTGTACCCGTGGGCACCGCCTCCGTGATGCACCATGGCCTGG CTGTCGGGCCCCTTGTGCCAGGCTCGGTCAAGAACGTCCAGGACTTTCTCGCATGGGCCAAGGCCAACCCGAAAGACGCC AGCTATGGCTCGCCCGCGGCCGGTTCAACCCCTCATTTCATTGGTGCCTTGCTGGGCATGAACAACAACGTTGAACTCAA GCACGTACCCTACCGTGGGTCGGTGCCCGGCGTGACCGATGTTGTCGGCGGACAGCTCGCCGCGATGGTCACACCGCACG GCGATTTCATTCCCAACCACAAGGCCGGCAAGCTGCGCATCCTGGCAACCTCCGGAAAACAGCGTTCGCCGTTCGTACCC GAAGTCGCAACCTTCGCCGAGCAGGGCTTTGCCGACCTGACCGTTGAAGAGTGGTTCGGCTTTTACGCGCCTGCGAAAAC CCCCGCAGCCGTTATTGCGGCAGCCAACGCCGCGATCAACGCCGCGATCAAGGACAAATCTGTCATTGATTCGTTGACGG TGGTGGGGCTGATCCCGTTTGGTGGCAGCGCCGAAGACATGGCACGCAGCCAAAAAATTGAGTTCGACCGCTGGGGTCCG CTGATCAAGAAAATCGGTTTCACCGCCGAATCCTGA
Upstream 100 bases:
>100_bases AGACCCTTGGGCTCTCAGCCGAGTCTTGATGCGCTTGCCTTCCACTGGTCCATTCGCTTCCCTCGCTTTCCCCGCCTACC TAACTACAAGGAGACATTTC
Downstream 100 bases:
>100_bases TCTCTGACTGATGCCTGAATGATGTCTAGCAGACGAGTCGCAGTGGCGATCCATGCACTACCAGCCCTCGCATCATCAGG CGTCTGCGACCAGCTTTCAC
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 331
Protein sequence:
>331_residues MQTRRNFIQTSAALAAATAGLAPFSAFAQALEQVKILYGFPAGSSGDICARRVGDRLGGTAYAKNNAIVDTKAGAGGRIA LEGLKMAAADGSVLAMTPFSCMSLYPHIYKKLAYDPFKDFVPVGTASVMHHGLAVGPLVPGSVKNVQDFLAWAKANPKDA SYGSPAAGSTPHFIGALLGMNNNVELKHVPYRGSVPGVTDVVGGQLAAMVTPHGDFIPNHKAGKLRILATSGKQRSPFVP EVATFAEQGFADLTVEEWFGFYAPAKTPAAVIAAANAAINAAIKDKSVIDSLTVVGLIPFGGSAEDMARSQKIEFDRWGP LIKKIGFTAES
Sequences:
>Translated_331_residues MQTRRNFIQTSAALAAATAGLAPFSAFAQALEQVKILYGFPAGSSGDICARRVGDRLGGTAYAKNNAIVDTKAGAGGRIA LEGLKMAAADGSVLAMTPFSCMSLYPHIYKKLAYDPFKDFVPVGTASVMHHGLAVGPLVPGSVKNVQDFLAWAKANPKDA SYGSPAAGSTPHFIGALLGMNNNVELKHVPYRGSVPGVTDVVGGQLAAMVTPHGDFIPNHKAGKLRILATSGKQRSPFVP EVATFAEQGFADLTVEEWFGFYAPAKTPAAVIAAANAAINAAIKDKSVIDSLTVVGLIPFGGSAEDMARSQKIEFDRWGP LIKKIGFTAES >Mature_331_residues MQTRRNFIQTSAALAAATAGLAPFSAFAQALEQVKILYGFPAGSSGDICARRVGDRLGGTAYAKNNAIVDTKAGAGGRIA LEGLKMAAADGSVLAMTPFSCMSLYPHIYKKLAYDPFKDFVPVGTASVMHHGLAVGPLVPGSVKNVQDFLAWAKANPKDA SYGSPAAGSTPHFIGALLGMNNNVELKHVPYRGSVPGVTDVVGGQLAAMVTPHGDFIPNHKAGKLRILATSGKQRSPFVP EVATFAEQGFADLTVEEWFGFYAPAKTPAAVIAAANAAINAAIKDKSVIDSLTVVGLIPFGGSAEDMARSQKIEFDRWGP LIKKIGFTAES
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 34565; Mature: 34565
Theoretical pI: Translated: 9.62; Mature: 9.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTRRNFIQTSAALAAATAGLAPFSAFAQALEQVKILYGFPAGSSGDICARRVGDRLGGT CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHCCC AYAKNNAIVDTKAGAGGRIALEGLKMAAADGSVLAMTPFSCMSLYPHIYKKLAYDPFKDF EEECCCEEEECCCCCCCEEEEECEEEECCCCCEEEECCHHHHHHHHHHHHHHCCCCHHHH VPVGTASVMHHGLAVGPLVPGSVKNVQDFLAWAKANPKDASYGSPAAGSTPHFIGALLGM CCCCHHHHHHCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCC NNNVELKHVPYRGSVPGVTDVVGGQLAAMVTPHGDFIPNHKAGKLRILATSGKQRSPFVP CCCEEEEECCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCC EVATFAEQGFADLTVEEWFGFYAPAKTPAAVIAAANAAINAAIKDKSVIDSLTVVGLIPF HHHHHHHCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHEEEEEEECC GGSAEDMARSQKIEFDRWGPLIKKIGFTAES CCCHHHHHHHHCCCCHHHHHHHHHHCCCCCC >Mature Secondary Structure MQTRRNFIQTSAALAAATAGLAPFSAFAQALEQVKILYGFPAGSSGDICARRVGDRLGGT CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHCCC AYAKNNAIVDTKAGAGGRIALEGLKMAAADGSVLAMTPFSCMSLYPHIYKKLAYDPFKDF EEECCCEEEECCCCCCCEEEEECEEEECCCCCEEEECCHHHHHHHHHHHHHHCCCCHHHH VPVGTASVMHHGLAVGPLVPGSVKNVQDFLAWAKANPKDASYGSPAAGSTPHFIGALLGM CCCCHHHHHHCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCC NNNVELKHVPYRGSVPGVTDVVGGQLAAMVTPHGDFIPNHKAGKLRILATSGKQRSPFVP CCCEEEEECCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCC EVATFAEQGFADLTVEEWFGFYAPAKTPAAVIAAANAAINAAIKDKSVIDSLTVVGLIPF HHHHHHHCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHEEEEEEECC GGSAEDMARSQKIEFDRWGPLIKKIGFTAES CCCHHHHHHHHCCCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2013566 [H]