| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91788975
Identifier: 91788975
GI number: 91788975
Start: 3288955
End: 3289377
Strand: Direct
Name: 91788975
Synonym: Bpro_3115
Alternate gene names: NA
Gene position: 3288955-3289377 (Clockwise)
Preceding gene: 91788974
Following gene: 91788976
Centisome position: 63.25
GC content: 63.36
Gene sequence:
>423_bases ATGAGCAAGACCACCGTCTACGACATCAAGGTGCAGTTCGGCGACTGCGACCCGGCCGGCATCGTGTTCTTCCCCAACTT TTCGAAGTGGATGGACGCCGCCTCGCTGCACTTCTTCATGGAATGCGGCGTGCCGCCATGGCGTGAACTCGTCAAGACCA CGGGCATCGTCGGCACGCCCCTGCTGGAGATCCACACCCGGTTCATGCGCCCCGCCACCTACGGCCAGACGCTGCACATC CACACCAGCATCGAGGAGTGGCGCGACAAGGTGTTCATCCAGAAGCACATCGTCAAGCGCGGCGAAGAGGTGCTGTGCGA AGGCCGCGAAACCCGCGCCTTCGTGGTCCGCCCGGCGGGCGAACCCGACCGCATCAAGGCCATCCCGATTCCGGACGACA TCAAGGCCAGGTGCTTTGAGTAG
Upstream 100 bases:
>100_bases AACTGGCCAGCCACATCGTCACCAACATGCACCTGAACGGCGAAGTGATTCGTCTCGACGGCGCTCTGCGCATGGCGCCA CGCTGACCCGGGAGCCCTTC
Downstream 100 bases:
>100_bases CTGAGCCCATTGATCTTCAAGAACCTGCATTTTTAATTCAACGAGACAAGCCCATGACGACACACCGCGCCGCCTGCATG CAACCAGACGTGGCGCGCGG
Product: thioesterase superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MSKTTVYDIKVQFGDCDPAGIVFFPNFSKWMDAASLHFFMECGVPPWRELVKTTGIVGTPLLEIHTRFMRPATYGQTLHI HTSIEEWRDKVFIQKHIVKRGEEVLCEGRETRAFVVRPAGEPDRIKAIPIPDDIKARCFE
Sequences:
>Translated_140_residues MSKTTVYDIKVQFGDCDPAGIVFFPNFSKWMDAASLHFFMECGVPPWRELVKTTGIVGTPLLEIHTRFMRPATYGQTLHI HTSIEEWRDKVFIQKHIVKRGEEVLCEGRETRAFVVRPAGEPDRIKAIPIPDDIKARCFE >Mature_139_residues SKTTVYDIKVQFGDCDPAGIVFFPNFSKWMDAASLHFFMECGVPPWRELVKTTGIVGTPLLEIHTRFMRPATYGQTLHIH TSIEEWRDKVFIQKHIVKRGEEVLCEGRETRAFVVRPAGEPDRIKAIPIPDDIKARCFE
Specific function: Hydrolyzes 4-hydroxybenzoate-CoA, and to a lesser extent benzoyl-CoA and 4-chlorobenzoate-CoA. Not active against aliphatic acyl-CoA thioesters, including palmitoyl-CoA, hexanoyl-CoA and acetyl-CoA [H]
COG id: COG0824
COG function: function code R; Predicted thioesterase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008272 - InterPro: IPR006683 [H]
Pfam domain/function: PF03061 4HBT [H]
EC number: =3.1.2.23 [H]
Molecular weight: Translated: 16093; Mature: 15962
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTTVYDIKVQFGDCDPAGIVFFPNFSKWMDAASLHFFMECGVPPWRELVKTTGIVGTP CCCCEEEEEEEEECCCCCCCEEECCCHHHHHHHHHHEEEEECCCCHHHHHHHHCCCCCCC LLEIHTRFMRPATYGQTLHIHTSIEEWRDKVFIQKHIVKRGEEVLCEGRETRAFVVRPAG HHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCHHEECCCCCCEEEEEECCC EPDRIKAIPIPDDIKARCFE CCCCEEEECCCCCCHHCCCC >Mature Secondary Structure SKTTVYDIKVQFGDCDPAGIVFFPNFSKWMDAASLHFFMECGVPPWRELVKTTGIVGTP CCCEEEEEEEEECCCCCCCEEECCCHHHHHHHHHHEEEEECCCCHHHHHHHHCCCCCCC LLEIHTRFMRPATYGQTLHIHTSIEEWRDKVFIQKHIVKRGEEVLCEGRETRAFVVRPAG HHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCHHEECCCCCCEEEEEECCC EPDRIKAIPIPDDIKARCFE CCCCEEEECCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1351742; 1610806; 9837940 [H]