| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is lpxA [H]
Identifier: 91788545
GI number: 91788545
Start: 2824160
End: 2824972
Strand: Reverse
Name: lpxA [H]
Synonym: Bpro_2683
Alternate gene names: 91788545
Gene position: 2824972-2824160 (Counterclockwise)
Preceding gene: 91788546
Following gene: 91788544
Centisome position: 54.32
GC content: 61.25
Gene sequence:
>813_bases ATGACCGCGCCAGTTCCCGCGCCGGGCATTCATGCCACCGCCCTTGTCGATCCTCTGGCCCAGCTGGACAGCTCGGTCAG TGTCGGCCCTTACACGGTTATCGGTCCCCATGTCAGGGTGGGGGCAGGCACCACCATCGGGGCCCATTGCGTGATCGAGG GCCACACAACGATAGGTCGCGACAACCGGATTTTCCAGTTCAACTCGCTCGGTGCGATTCCGCAGGACAAAAAATACGCG GGCGAACCCTGCGAACTGGTCATTGGCGACCGCAACACCATCCGCGAGTTCTGTACTTTCAATATCGGCTCACCGGGTGA CAGCGGTGTGACAAGCGTGGGCGATGACAACTGGATCATGGCTTATGTGCATCTGGCGCATGACTGTGTGGTGGGTAACC ACACGATCTTCGCCAACAACTCCCAGCTGGCCGGTCACGTTTATGTGGGCGACTGGGTCATTCTGGGCGGTTTTACCGTG GCGCACCAATTTGTCCGGCTGGGCGCCCACAGCATGACGGCCATGTGTTCGCTGCTGTTTGCCGATTTGCCGCCGTTCGT CATGGCACAAGGCCAGCCCGCGCAGGCGCGGTCGATGAATTTTGAGGGCCTGCGGCGCCGCGGCTTTTCTGCCGGACGCC TTTCGGCCGTCAAGGCCATGCACAAGGCGCTGTACCGGGATGATTTGACACTGGATCTGGCCCGGGCTCGAATCGCTGAA CTGGCCGACAAGCAGCCGGAAGCGGCTCCCGATATCCAGATGATGCTGTCATTCCTGGCGCAAACCTCGCCGCAGCGCGG CATTGTCCGGTAG
Upstream 100 bases:
>100_bases TTCAAATTCAAGGGTGTGACGCGCGTGGGTGAGGCCATCGCCTGCGAGGCCGAGTTGATGTGCACCATGCGCACCATTGC CTGAAGGTGGCTTGAAAGAC
Downstream 100 bases:
>100_bases CCGGCCTCCATGAGCGCGGCACCCAGGATCGCCATGGTTGCCGGAGAAACTTCCGGTGATTTGCTGGCTGGCTTGCTGCT GGACGGGCTGCGTGAGCGCT
Product: UDP-N-acetylglucosamine acyltransferase
Products: NA
Alternate protein names: UDP-N-acetylglucosamine acyltransferase [H]
Number of amino acids: Translated: 270; Mature: 269
Protein sequence:
>270_residues MTAPVPAPGIHATALVDPLAQLDSSVSVGPYTVIGPHVRVGAGTTIGAHCVIEGHTTIGRDNRIFQFNSLGAIPQDKKYA GEPCELVIGDRNTIREFCTFNIGSPGDSGVTSVGDDNWIMAYVHLAHDCVVGNHTIFANNSQLAGHVYVGDWVILGGFTV AHQFVRLGAHSMTAMCSLLFADLPPFVMAQGQPAQARSMNFEGLRRRGFSAGRLSAVKAMHKALYRDDLTLDLARARIAE LADKQPEAAPDIQMMLSFLAQTSPQRGIVR
Sequences:
>Translated_270_residues MTAPVPAPGIHATALVDPLAQLDSSVSVGPYTVIGPHVRVGAGTTIGAHCVIEGHTTIGRDNRIFQFNSLGAIPQDKKYA GEPCELVIGDRNTIREFCTFNIGSPGDSGVTSVGDDNWIMAYVHLAHDCVVGNHTIFANNSQLAGHVYVGDWVILGGFTV AHQFVRLGAHSMTAMCSLLFADLPPFVMAQGQPAQARSMNFEGLRRRGFSAGRLSAVKAMHKALYRDDLTLDLARARIAE LADKQPEAAPDIQMMLSFLAQTSPQRGIVR >Mature_269_residues TAPVPAPGIHATALVDPLAQLDSSVSVGPYTVIGPHVRVGAGTTIGAHCVIEGHTTIGRDNRIFQFNSLGAIPQDKKYAG EPCELVIGDRNTIREFCTFNIGSPGDSGVTSVGDDNWIMAYVHLAHDCVVGNHTIFANNSQLAGHVYVGDWVILGGFTVA HQFVRLGAHSMTAMCSLLFADLPPFVMAQGQPAQARSMNFEGLRRRGFSAGRLSAVKAMHKALYRDDLTLDLARARIAEL ADKQPEAAPDIQMMLSFLAQTSPQRGIVR
Specific function: Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell [H]
COG id: COG1043
COG function: function code M; Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transferase hexapeptide repeat family. LpxA subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786378, Length=261, Percent_Identity=46.7432950191571, Blast_Score=254, Evalue=4e-69, Organism=Escherichia coli, GI1786376, Length=247, Percent_Identity=24.6963562753036, Blast_Score=64, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001451 - InterPro: IPR010137 - InterPro: IPR011004 [H]
Pfam domain/function: PF00132 Hexapep [H]
EC number: =2.3.1.129 [H]
Molecular weight: Translated: 28961; Mature: 28830
Theoretical pI: Translated: 7.10; Mature: 7.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPVPAPGIHATALVDPLAQLDSSVSVGPYTVIGPHVRVGAGTTIGAHCVIEGHTTIGR CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCEEEECCCCEECEEEEEECCCEECC DNRIFQFNSLGAIPQDKKYAGEPCELVIGDRNTIREFCTFNIGSPGDSGVTSVGDDNWIM CCEEEEECCCCCCCCCCCCCCCCCEEEECCHHHHHHHHEECCCCCCCCCCCCCCCCCEEE AYVHLAHDCVVGNHTIFANNSQLAGHVYVGDWVILGGFTVAHQFVRLGAHSMTAMCSLLF EEEEHHHHEEECCEEEEECCCCEEEEEEECCEEEECCHHHHHHHHHHCHHHHHHHHHHHH ADLPPFVMAQGQPAQARSMNFEGLRRRGFSAGRLSAVKAMHKALYRDDLTLDLARARIAE HCCCHHHEECCCCCHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LADKQPEAAPDIQMMLSFLAQTSPQRGIVR HHCCCCCCCCCHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TAPVPAPGIHATALVDPLAQLDSSVSVGPYTVIGPHVRVGAGTTIGAHCVIEGHTTIGR CCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCEEEECCCCEECEEEEEECCCEECC DNRIFQFNSLGAIPQDKKYAGEPCELVIGDRNTIREFCTFNIGSPGDSGVTSVGDDNWIM CCEEEEECCCCCCCCCCCCCCCCCEEEECCHHHHHHHHEECCCCCCCCCCCCCCCCCEEE AYVHLAHDCVVGNHTIFANNSQLAGHVYVGDWVILGGFTVAHQFVRLGAHSMTAMCSLLF EEEEHHHHEEECCEEEEECCCCEEEEEEECCEEEECCHHHHHHHHHHCHHHHHHHHHHHH ADLPPFVMAQGQPAQARSMNFEGLRRRGFSAGRLSAVKAMHKALYRDDLTLDLARARIAE HCCCHHHEECCCCCHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LADKQPEAAPDIQMMLSFLAQTSPQRGIVR HHCCCCCCCCCHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA