| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is lpxB [H]
Identifier: 91788544
GI number: 91788544
Start: 2822996
End: 2824126
Strand: Reverse
Name: lpxB [H]
Synonym: Bpro_2682
Alternate gene names: 91788544
Gene position: 2824126-2822996 (Counterclockwise)
Preceding gene: 91788545
Following gene: 91788543
Centisome position: 54.31
GC content: 59.95
Gene sequence:
>1131_bases ATGGTTGCCGGAGAAACTTCCGGTGATTTGCTGGCTGGCTTGCTGCTGGACGGGCTGCGTGAGCGCTGGCCGGGCTTGCA GACCTGCGGTATTGGCGGGCCGTACATGGCCGGGCGCGGTTTTCAGGCCTGGTGGCCGCACGACAAGCTGGCGGTACGCG GCTATGTGGAGGTGCTGCGTCATTACCGTGAGATCGTCGGCATACGCGAGCAACTGAAAAAGCGGCTGCTCGATCAGCGC CCTGATATTTTCATCGGTGTAGACGCCCCCGACTTCAATCTCGACCTCGAAGCGGCTCTGAAGGCGCAGGGCATCAAGAC CGTCCATTTTGTCAGTCCTTCCGTCTGGGCCTGGCGTGCGAACCGCGTCGAGAAGATCCGGCGCAGCGTAGACCACGTGC TGTGCATTTTTCCGTTCGAACCAGCCTTGCTGGCTTCCCATGGCATTGCGGCCACGTATGTCGGCCATCCGCTGGCCAGC GTGATTCCCCTGCAGCCGGACCGGGCCGCCGCGAGGCGCAAGTTGGGACTGCAGGATGACGCCGTGGTCATCGCGATCTT GCCGGGTAGCCGCAAGTCCGAGATCCAATATTTGGCCGAGAGGTTTTTCAGGGCTGCAGCCTTGGTAAAACGAGCACAAC CGGCTATCAAATTTATAGTTCCAGCCGTCCCTTTGCTGAAAACCGTGATCGAGCGACTGGCCGATGCGGCCGGCATGCGG GCCGACCTGCAAATTATCGAAGGCCAGTCGCACACCGCGCTCGCTGCTTGCGATGTGACCCTGATTGCCAGCGGCACCGC GACCCTGGAAGCGGCTTTGTTCAAGCGCCCCATGGTGATTGCCTACAACATGAACTGGCTGTCGTGGCAGATCATGCGGC GCAAGAAGCTGCAGCCCTGGGTTGGACTGCCCAATATCCTGTGCCAGGATTTCGTTGTGCCCGAGCTGCTGCAGGAAGCG GCGACGCCAGAAGCGTTGGCTGCCGGGTTGTTGCAATGGGTGGATGCAAAATCAACGGCTCCTGCCAAAATAGCGGCTGT TGAACAACGATTCATGGCGCTGCATGCCGAACTGCAGCGCGATACTTCTCAATTGGCGACCGATGCGATCCAGCAAATTC TTGAAAGCTGA
Upstream 100 bases:
>100_bases TCCCGATATCCAGATGATGCTGTCATTCCTGGCGCAAACCTCGCCGCAGCGCGGCATTGTCCGGTAGCCGGCCTCCATGA GCGCGGCACCCAGGATCGCC
Downstream 100 bases:
>100_bases GCAAACTCCCTTGTCCTGGGACACTCCCGGTCTCCTGGCCGGCGTGGACGAGGCCGGGCGGGGCCCGCTGATGGGCCCAG TGGTGGCTGCGGCTGTCATC
Product: lipid-A-disaccharide synthase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 376; Mature: 376
Protein sequence:
>376_residues MVAGETSGDLLAGLLLDGLRERWPGLQTCGIGGPYMAGRGFQAWWPHDKLAVRGYVEVLRHYREIVGIREQLKKRLLDQR PDIFIGVDAPDFNLDLEAALKAQGIKTVHFVSPSVWAWRANRVEKIRRSVDHVLCIFPFEPALLASHGIAATYVGHPLAS VIPLQPDRAAARRKLGLQDDAVVIAILPGSRKSEIQYLAERFFRAAALVKRAQPAIKFIVPAVPLLKTVIERLADAAGMR ADLQIIEGQSHTALAACDVTLIASGTATLEAALFKRPMVIAYNMNWLSWQIMRRKKLQPWVGLPNILCQDFVVPELLQEA ATPEALAAGLLQWVDAKSTAPAKIAAVEQRFMALHAELQRDTSQLATDAIQQILES
Sequences:
>Translated_376_residues MVAGETSGDLLAGLLLDGLRERWPGLQTCGIGGPYMAGRGFQAWWPHDKLAVRGYVEVLRHYREIVGIREQLKKRLLDQR PDIFIGVDAPDFNLDLEAALKAQGIKTVHFVSPSVWAWRANRVEKIRRSVDHVLCIFPFEPALLASHGIAATYVGHPLAS VIPLQPDRAAARRKLGLQDDAVVIAILPGSRKSEIQYLAERFFRAAALVKRAQPAIKFIVPAVPLLKTVIERLADAAGMR ADLQIIEGQSHTALAACDVTLIASGTATLEAALFKRPMVIAYNMNWLSWQIMRRKKLQPWVGLPNILCQDFVVPELLQEA ATPEALAAGLLQWVDAKSTAPAKIAAVEQRFMALHAELQRDTSQLATDAIQQILES >Mature_376_residues MVAGETSGDLLAGLLLDGLRERWPGLQTCGIGGPYMAGRGFQAWWPHDKLAVRGYVEVLRHYREIVGIREQLKKRLLDQR PDIFIGVDAPDFNLDLEAALKAQGIKTVHFVSPSVWAWRANRVEKIRRSVDHVLCIFPFEPALLASHGIAATYVGHPLAS VIPLQPDRAAARRKLGLQDDAVVIAILPGSRKSEIQYLAERFFRAAALVKRAQPAIKFIVPAVPLLKTVIERLADAAGMR ADLQIIEGQSHTALAACDVTLIASGTATLEAALFKRPMVIAYNMNWLSWQIMRRKKLQPWVGLPNILCQDFVVPELLQEA ATPEALAAGLLQWVDAKSTAPAKIAAVEQRFMALHAELQRDTSQLATDAIQQILES
Specific function: Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell [H]
COG id: COG0763
COG function: function code M; Lipid A disaccharide synthetase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lpxB family [H]
Homologues:
Organism=Escherichia coli, GI1786379, Length=374, Percent_Identity=40.1069518716578, Blast_Score=276, Evalue=2e-75,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003835 [H]
Pfam domain/function: PF02684 LpxB [H]
EC number: =2.4.1.182 [H]
Molecular weight: Translated: 41471; Mature: 41471
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAGETSGDLLAGLLLDGLRERWPGLQTCGIGGPYMAGRGFQAWWPHDKLAVRGYVEVLR CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH HYREIVGIREQLKKRLLDQRPDIFIGVDAPDFNLDLEAALKAQGIKTVHFVSPSVWAWRA HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHH NRVEKIRRSVDHVLCIFPFEPALLASHGIAATYVGHPLASVIPLQPDRAAARRKLGLQDD HHHHHHHHHHHHEEEEECCCHHHHHHCCCHHHHHCCCHHHHCCCCCCHHHHHHHCCCCCC AVVIAILPGSRKSEIQYLAERFFRAAALVKRAQPAIKFIVPAVPLLKTVIERLADAAGMR CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ADLQIIEGQSHTALAACDVTLIASGTATLEAALFKRPMVIAYNMNWLSWQIMRRKKLQPW CCEEEECCCCCCEEEEECEEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCC VGLPNILCQDFVVPELLQEAATPEALAAGLLQWVDAKSTAPAKIAAVEQRFMALHAELQR CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH DTSQLATDAIQQILES HHHHHHHHHHHHHHCC >Mature Secondary Structure MVAGETSGDLLAGLLLDGLRERWPGLQTCGIGGPYMAGRGFQAWWPHDKLAVRGYVEVLR CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH HYREIVGIREQLKKRLLDQRPDIFIGVDAPDFNLDLEAALKAQGIKTVHFVSPSVWAWRA HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHH NRVEKIRRSVDHVLCIFPFEPALLASHGIAATYVGHPLASVIPLQPDRAAARRKLGLQDD HHHHHHHHHHHHEEEEECCCHHHHHHCCCHHHHHCCCHHHHCCCCCCHHHHHHHCCCCCC AVVIAILPGSRKSEIQYLAERFFRAAALVKRAQPAIKFIVPAVPLLKTVIERLADAAGMR CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ADLQIIEGQSHTALAACDVTLIASGTATLEAALFKRPMVIAYNMNWLSWQIMRRKKLQPW CCEEEECCCCCCEEEEECEEEEECCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCC VGLPNILCQDFVVPELLQEAATPEALAAGLLQWVDAKSTAPAKIAAVEQRFMALHAELQR CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH DTSQLATDAIQQILES HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA