| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is fixJ [H]
Identifier: 91788536
GI number: 91788536
Start: 2814240
End: 2814866
Strand: Direct
Name: fixJ [H]
Synonym: Bpro_2674
Alternate gene names: 91788536
Gene position: 2814240-2814866 (Clockwise)
Preceding gene: 91788535
Following gene: 91788537
Centisome position: 54.12
GC content: 60.45
Gene sequence:
>627_bases ATGAGCTTGATTCCCAAAAAAGGCACTGTTTACGTCATTGATGATGACGAGGGCGTGCGCGATTCGCTGCAATGGCTGCT CGAAGGCAAGGACTACCGGGTGCGCTGCTACGACTCGGCTGAAACATTTCTGAGCCGCTACGACGCGCGCGAAGTGGCCT GCCTGATCGTGGATATCCGCATGGGCGGCATGACCGGCCTGGAGCTGCAGGACCGGCTGGTCGAACGCAAGTCGCCGTTG CCGATTGTCTTCATCACCGGCCACGGCGATGTCCCCATGGCGGTCAACACCATGAAGAAAGGCGCCATGGACTTCATCCA GAAGCCTTTTCAGGAAGAAGCGCTGGTCAATCTGGTCGAGCGCATGCTGGAACAGGCCAAGGAAGCCTTCGCAGGCCACC AGCAATCCGCCAGCCGCGACGCCCTGCTGGCCAAGCTGACGTCGCGCGAAGCGCAGGTGCTCGAACGCATCGTGGCGGGC CGCCTGAACAAGCAGATTGCCGACGACCTGGGCATCAGCATCAAGACGGTGGAAGCCCACCGCGCCAACATCATGGAAAA GCTCAATGCCAATACCGTGGCTGACCTGCTGAAAATAGCGCTGGGCTCCAACGCGCCCAAGGCCTGA
Upstream 100 bases:
>100_bases CTGCACCTTCTGCTAGCGATACTGTAGCGGCCAAGGATGCCGGCGTTCACTAAAGCACCTTCAGGAATAGTTTCGAGAAG TTCACAAAAGAAAGTTTGGC
Downstream 100 bases:
>100_bases GAGCCACCGGAGCCGAATTCCCAGCCGCTAACTTTTTATAGCTGCTTGCGCCCGTAGTTCCTGGACTAGCGGGCGTTTTT ACTTAGAAAATTGAAATCAT
Product: two component LuxR family transcriptional regulator
Products: NADP; 2 glutathione [C]
Alternate protein names: NA
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MSLIPKKGTVYVIDDDEGVRDSLQWLLEGKDYRVRCYDSAETFLSRYDAREVACLIVDIRMGGMTGLELQDRLVERKSPL PIVFITGHGDVPMAVNTMKKGAMDFIQKPFQEEALVNLVERMLEQAKEAFAGHQQSASRDALLAKLTSREAQVLERIVAG RLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIALGSNAPKA
Sequences:
>Translated_208_residues MSLIPKKGTVYVIDDDEGVRDSLQWLLEGKDYRVRCYDSAETFLSRYDAREVACLIVDIRMGGMTGLELQDRLVERKSPL PIVFITGHGDVPMAVNTMKKGAMDFIQKPFQEEALVNLVERMLEQAKEAFAGHQQSASRDALLAKLTSREAQVLERIVAG RLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIALGSNAPKA >Mature_207_residues SLIPKKGTVYVIDDDEGVRDSLQWLLEGKDYRVRCYDSAETFLSRYDAREVACLIVDIRMGGMTGLELQDRLVERKSPLP IVFITGHGDVPMAVNTMKKGAMDFIQKPFQEEALVNLVERMLEQAKEAFAGHQQSASRDALLAKLTSREAQVLERIVAGR LNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIALGSNAPKA
Specific function: FixJ, when activated by fixL, induces the expression of both nifA, required for activation of classical nif and fix genes, and fixK, required for fixN activation [H]
COG id: COG4566
COG function: function code T; Response regulator
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1790299, Length=123, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1786747, Length=184, Percent_Identity=26.6304347826087, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1790102, Length=195, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788222, Length=212, Percent_Identity=24.5283018867925, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1788905, Length=162, Percent_Identity=27.1604938271605, Blast_Score=61, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR016032 - InterPro: IPR001789 - InterPro: IPR000792 - InterPro: IPR011991 [H]
Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]
EC number: NA
Molecular weight: Translated: 23084; Mature: 22953
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLIPKKGTVYVIDDDEGVRDSLQWLLEGKDYRVRCYDSAETFLSRYDAREVACLIVDIR CCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHCHHHEEEEEEEEE MGGMTGLELQDRLVERKSPLPIVFITGHGDVPMAVNTMKKGAMDFIQKPFQEEALVNLVE ECCCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH RMLEQAKEAFAGHQQSASRDALLAKLTSREAQVLERIVAGRLNKQIADDLGISIKTVEAH HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHH RANIMEKLNANTVADLLKIALGSNAPKA HHHHHHHHCCHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SLIPKKGTVYVIDDDEGVRDSLQWLLEGKDYRVRCYDSAETFLSRYDAREVACLIVDIR CCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHCHHHEEEEEEEEE MGGMTGLELQDRLVERKSPLPIVFITGHGDVPMAVNTMKKGAMDFIQKPFQEEALVNLVE ECCCCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH RMLEQAKEAFAGHQQSASRDALLAKLTSREAQVLERIVAGRLNKQIADDLGISIKTVEAH HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHH RANIMEKLNANTVADLLKIALGSNAPKA HHHHHHHHCCHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NADPH2; oxidized glutathione [C]
Specific reaction: NADPH2 + oxidized glutathione = NADP + 2 glutathione [C]
General reaction: Oxidoreductases; Acting on NADH or NADPH; With a disulfide as acceptor [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2000090; 12597275 [H]