| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is tar [C]
Identifier: 91788330
GI number: 91788330
Start: 2572262
End: 2573929
Strand: Direct
Name: tar [C]
Synonym: Bpro_2465
Alternate gene names: 91788330
Gene position: 2572262-2573929 (Clockwise)
Preceding gene: 91788329
Following gene: 91788331
Centisome position: 49.46
GC content: 62.89
Gene sequence:
>1668_bases ATGAAGATTTCAACCAGACTCAGTCTTGCCGGAATATTCTCCGTTGGAGTCGTTGCGGTCATCGGCTTCGTGCTGCTGTC CGCAACGCATCAGGTGAGGCAAGAACTCACCAAGAACGAGACAGCCGGCGAAATTCTCAATGCAGCTACCGCCGTCAGAT ACCTCACACTGGAGTATGTGGCGAGTCATGAGGATCGCGTGCGTGCCCAATGGGAACTGAGGCACGCATCGCTATCGAAG CTGCTCGCGGGCGCGACGGAATTCACCGGCCAGGAGGAACAGTCCATCATAGAAGACCTCCGTCACACGCATCAAGGTGT CAACACCCTGTTCACCGAGCTCGCCGCGAACCAGCAAAACAGGGAAGCAGAGAAGGGGAAAGGCGCGATCCTCAAAGACC TGGAGAGCCGGTTGACCGGCCAGATCATGAACAAGGCTCAGGCCATGATTTCCGGCGCGCTAAGCCTTTCCGACCGAAGC CGGACGGGGGTCCTGGATGCGCAACAACGGACAAGCGCCGCGGTAGTGACGTTCGGCGGTGTCGTCGTGTTTGTCATTGC GGCGACGCTGTTTCTGGCGCTTGGAAGCGTGACCCGGCCGCTTGAGAAGCTGCGCGAAGGCATTGCAATCGTGGGTGCAG GCAATCTGGATCACCGGCTCGCCATCACTGCGAAGGACGAAATAGGGAGTCTGTCGCGCGCGTTCGACGAGATGACGGAA AAGTTGAAGGCGACAACTGTATCGCGTGACGAACTGGGGCAAGGCAACGCAGTCTTGCAGGCCGAAGTCGCCGAGCGCAA GCGGGTAGAAGAGAACCTTCGCCTGTTGATGCAGGAAACGCAGGAAATAGTGAATGTGCTTTCCTCTTTCTCCAGCGAAA TCGTTGCCTCGACCACTCAACTTGCCGCCAGCGCCAGCCAGTCGGCTGCGGCGGTGACCGAGACCACCACCACGGTGGAG GAGGTTCGGCAAACGGCGCAGGTGGCCAGCCAGAAGGCCAGGCTGGTGTCCGACAGCGCGCAGAAAGCGGCACAGAGCTC CCAGAACGGGCGCAAGTCCACCGAGGATGTGGGTGCCGGCATGACCAGGATCCGTCAGCAGATGGAGGCGATTGCCGCCA GCATGACGCGACTGTCCGAGCAGAGCCGGGCGATCGGGCGGATCATGGCGAGCGTGGAAGACCTGGCCGCCCAGTCGAAC CTGCTGGCCGTCAATGCCGCCATCGAGGCGGCCAGGGCGGGCGAGCACGGCAAGGGCTTTGGCGTGGTAGCGCAGGAAGT CAAAAGCCTGGCGGAGCAGTCGCGCCAGGCGACCACCCAGGTGCGTACCATCCTGGGGGACATCCAGAAGGCGACGATCG CGGCGGTGCTGGCGACCGAGCAAGGCAGCAAGGCGGTGGAGGCGGGGAGCCGGCAGACCGAAGTGGCGGGCGAGTCCATC CAGGCGCTGGCCGGCAGCGTGACGGAGGCGGTGCAGGCGGCCACGCAGATTGCGGCGTCGAGCCAGCAGCAACTGGCGGG GGTGGACCAGGTGGCGGGCGCGATGGAGAGCATCAGGCAGGCGAGCACGCAAAACGTGGCAAGCGCCAGGCAGTTGGAGG TTGCGGCGCGCAACCTGGATGAGCTGGGCCAGCGGCTCAAGCAGATGGCTGAGCGCTACAAGGTGTAA
Upstream 100 bases:
>100_bases GCAGGCGTACACATGCCCAATTACCTGAATTACGTCTCCCTCGACGCGCTCAAGGCAGTGTCGCCGGCGGCGGTAACGGT CATTCATTGAGGACGCCAAA
Downstream 100 bases:
>100_bases TCAAAAAGGTCGTCATGAGCACCAAGGAAGACAACTTTCTCCTGCAACTCCGCGCGACCTTCAAGGTCGAAGCCGAAGAG CATCTGCAGACGATCGCGGA
Product: methyl-accepting chemotaxis sensory transducer
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 555; Mature: 555
Protein sequence:
>555_residues MKISTRLSLAGIFSVGVVAVIGFVLLSATHQVRQELTKNETAGEILNAATAVRYLTLEYVASHEDRVRAQWELRHASLSK LLAGATEFTGQEEQSIIEDLRHTHQGVNTLFTELAANQQNREAEKGKGAILKDLESRLTGQIMNKAQAMISGALSLSDRS RTGVLDAQQRTSAAVVTFGGVVVFVIAATLFLALGSVTRPLEKLREGIAIVGAGNLDHRLAITAKDEIGSLSRAFDEMTE KLKATTVSRDELGQGNAVLQAEVAERKRVEENLRLLMQETQEIVNVLSSFSSEIVASTTQLAASASQSAAAVTETTTTVE EVRQTAQVASQKARLVSDSAQKAAQSSQNGRKSTEDVGAGMTRIRQQMEAIAASMTRLSEQSRAIGRIMASVEDLAAQSN LLAVNAAIEAARAGEHGKGFGVVAQEVKSLAEQSRQATTQVRTILGDIQKATIAAVLATEQGSKAVEAGSRQTEVAGESI QALAGSVTEAVQAATQIAASSQQQLAGVDQVAGAMESIRQASTQNVASARQLEVAARNLDELGQRLKQMAERYKV
Sequences:
>Translated_555_residues MKISTRLSLAGIFSVGVVAVIGFVLLSATHQVRQELTKNETAGEILNAATAVRYLTLEYVASHEDRVRAQWELRHASLSK LLAGATEFTGQEEQSIIEDLRHTHQGVNTLFTELAANQQNREAEKGKGAILKDLESRLTGQIMNKAQAMISGALSLSDRS RTGVLDAQQRTSAAVVTFGGVVVFVIAATLFLALGSVTRPLEKLREGIAIVGAGNLDHRLAITAKDEIGSLSRAFDEMTE KLKATTVSRDELGQGNAVLQAEVAERKRVEENLRLLMQETQEIVNVLSSFSSEIVASTTQLAASASQSAAAVTETTTTVE EVRQTAQVASQKARLVSDSAQKAAQSSQNGRKSTEDVGAGMTRIRQQMEAIAASMTRLSEQSRAIGRIMASVEDLAAQSN LLAVNAAIEAARAGEHGKGFGVVAQEVKSLAEQSRQATTQVRTILGDIQKATIAAVLATEQGSKAVEAGSRQTEVAGESI QALAGSVTEAVQAATQIAASSQQQLAGVDQVAGAMESIRQASTQNVASARQLEVAARNLDELGQRLKQMAERYKV >Mature_555_residues MKISTRLSLAGIFSVGVVAVIGFVLLSATHQVRQELTKNETAGEILNAATAVRYLTLEYVASHEDRVRAQWELRHASLSK LLAGATEFTGQEEQSIIEDLRHTHQGVNTLFTELAANQQNREAEKGKGAILKDLESRLTGQIMNKAQAMISGALSLSDRS RTGVLDAQQRTSAAVVTFGGVVVFVIAATLFLALGSVTRPLEKLREGIAIVGAGNLDHRLAITAKDEIGSLSRAFDEMTE KLKATTVSRDELGQGNAVLQAEVAERKRVEENLRLLMQETQEIVNVLSSFSSEIVASTTQLAASASQSAAAVTETTTTVE EVRQTAQVASQKARLVSDSAQKAAQSSQNGRKSTEDVGAGMTRIRQQMEAIAASMTRLSEQSRAIGRIMASVEDLAAQSN LLAVNAAIEAARAGEHGKGFGVVAQEVKSLAEQSRQATTQVRTILGDIQKATIAAVLATEQGSKAVEAGSRQTEVAGESI QALAGSVTEAVQAATQIAASSQQQLAGVDQVAGAMESIRQASTQNVASARQLEVAARNLDELGQRLKQMAERYKV
Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of
COG id: COG0840
COG function: function code NT; Methyl-accepting chemotaxis protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI1788195, Length=326, Percent_Identity=27.9141104294479, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI2367378, Length=345, Percent_Identity=27.2463768115942, Blast_Score=117, Evalue=3e-27, Organism=Escherichia coli, GI1787690, Length=394, Percent_Identity=27.6649746192893, Blast_Score=111, Evalue=1e-25, Organism=Escherichia coli, GI1788194, Length=370, Percent_Identity=26.4864864864865, Blast_Score=108, Evalue=8e-25, Organism=Escherichia coli, GI1789453, Length=381, Percent_Identity=27.2965879265092, Blast_Score=92, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004010 - InterPro: IPR003122 - InterPro: IPR004089 - InterPro: IPR003660 - InterPro: IPR022094 [H]
Pfam domain/function: PF02743 Cache_1; PF00672 HAMP; PF12332 McpA_N; PF00015 MCPsignal; PF02203 TarH [H]
EC number: NA
Molecular weight: Translated: 58971; Mature: 58971
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKISTRLSLAGIFSVGVVAVIGFVLLSATHQVRQELTKNETAGEILNAATAVRYLTLEYV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH ASHEDRVRAQWELRHASLSKLLAGATEFTGQEEQSIIEDLRHTHQGVNTLFTELAANQQN HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC REAEKGKGAILKDLESRLTGQIMNKAQAMISGALSLSDRSRTGVLDAQQRTSAAVVTFGG CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH VVVFVIAATLFLALGSVTRPLEKLREGIAIVGAGNLDHRLAITAKDEIGSLSRAFDEMTE HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHH KLKATTVSRDELGQGNAVLQAEVAERKRVEENLRLLMQETQEIVNVLSSFSSEIVASTTQ HHHHHHCCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAASASQSAAAVTETTTTVEEVRQTAQVASQKARLVSDSAQKAAQSSQNGRKSTEDVGAG HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH MTRIRQQMEAIAASMTRLSEQSRAIGRIMASVEDLAAQSNLLAVNAAIEAARAGEHGKGF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCCH GVVAQEVKSLAEQSRQATTQVRTILGDIQKATIAAVLATEQGSKAVEAGSRQTEVAGESI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHH QALAGSVTEAVQAATQIAASSQQQLAGVDQVAGAMESIRQASTQNVASARQLEVAARNLD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELGQRLKQMAERYKV HHHHHHHHHHHHHCC >Mature Secondary Structure MKISTRLSLAGIFSVGVVAVIGFVLLSATHQVRQELTKNETAGEILNAATAVRYLTLEYV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH ASHEDRVRAQWELRHASLSKLLAGATEFTGQEEQSIIEDLRHTHQGVNTLFTELAANQQN HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC REAEKGKGAILKDLESRLTGQIMNKAQAMISGALSLSDRSRTGVLDAQQRTSAAVVTFGG CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH VVVFVIAATLFLALGSVTRPLEKLREGIAIVGAGNLDHRLAITAKDEIGSLSRAFDEMTE HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHH KLKATTVSRDELGQGNAVLQAEVAERKRVEENLRLLMQETQEIVNVLSSFSSEIVASTTQ HHHHHHCCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAASASQSAAAVTETTTTVEEVRQTAQVASQKARLVSDSAQKAAQSSQNGRKSTEDVGAG HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH MTRIRQQMEAIAASMTRLSEQSRAIGRIMASVEDLAAQSNLLAVNAAIEAARAGEHGKGF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCCH GVVAQEVKSLAEQSRQATTQVRTILGDIQKATIAAVLATEQGSKAVEAGSRQTEVAGESI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHH QALAGSVTEAVQAATQIAASSQQQLAGVDQVAGAMESIRQASTQNVASARQLEVAARNLD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELGQRLKQMAERYKV HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA