| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is tap [C]
Identifier: 91788329
GI number: 91788329
Start: 2570180
End: 2571910
Strand: Direct
Name: tap [C]
Synonym: Bpro_2464
Alternate gene names: 91788329
Gene position: 2570180-2571910 (Clockwise)
Preceding gene: 91788328
Following gene: 91788330
Centisome position: 49.42
GC content: 63.32
Gene sequence:
>1731_bases ATGAAATGGAATGTCGGAACCAAGATGGGTGCAGGGTTTGGCCTGGCGATGGTTTTTTTTGTGATCGTCGGGGCGGTTTC CTATCGCAGCACAACGCAATTGATCGAGGCATCGGACTTGCGCCAGCACACCTACGAAGTGCTGAGTCGACTCGCGGAGA TGGAATTGCTGTCGGCAGACATGCAAAATGGCTTGCGGGGCTACGTCATCACCGGGGAAGAAAAATACCTGGAACCGTAT CAAACTGCGGTGGGAAAAATTGACAAAATCCTCCAGGAAGCCCGGAAATTGACCGAGGACAACCTGCGTGAGCAGCGACG CCTGGACGCGCTCGAACCGCTCGTCAAAAGTCGGATCGACCTCGCCAGGGAAACGATCGATGCCATACGGACCAAGGGAG AGGCGGCGGGCGTCGAACTCATCAAGACAGGCAAGGGCCGGACGCTCACGAGTGAAATTCGCAAGGTCATCGACGAGATG GAGCGCGAAGAAAAGGATTTGCTCAAACAACGCGCGGAGGCCGCGCAAAACGATGCCGACAACGCGAAACAGATCATCGT GTTGGGCACCCTCGCCGCCCTGGTGTTCGCGGCGCTGGCCGGATTCGTCATCACACGCAACATCGCCCGGCCTCTCCAGG ACCTCACGGCTGTCGCGGAACGGATCACTTTGGGCGACCTGAGCGTCAATGTGCCGGTTGATGATACCCGCAGCGACGAG GTGGGAGCGCTGGCACGGACGTTTGATCGCATGGTGCAGTCTCTGCGTGCGATGGCGAGCGCAGCCGAGCAGATCGCCGC CGGTGATCTGCGCTCGACCATCAAGCCTCAATCCCCCGATGACGTATTGGGCACCGCCTTTGCGCGGATGTCGGAGAGTC TTCGCGAGCAAATTCGTGGCTTGGCTGAAGGAGCGAACGTGCTGGGCTCGGCCGCCAGTGAAATCGTTGCCTCGACCACC CAGCTCGCCGCCAGCGCCAGCCAGTCGGCCGCGGCGGTGAGCGAGACCACCACGACGGTCGAAGAGGTTCGGCAAACCGC GCAGGTGGCCAGCCAGAAGGCCAAGCAGGTGTCCGACAGCGCGCAGAAGGCGGCACAGAGCTCCCAGAGCGGACGCAAGT CCACCGAGGACGTTGCGGCCGGGATGAATCGCATCCGGCTGCAGATGGAAGCCATTGCCGCCAGCATGGCGCGACTGTCC GAGCAGAGCCAGGCCATAGGCCGGATCATGGCCACCGTCGAGGACCTCGCTGCGCAATCCAACCTGCTGGCAGTCAACGC GGCCATCGAGGCCGCCAGGGCCGGCGAGCATGGCAAGGGCTTTGGCGTGGTAGCGCAGGAAGTCAAGAGCCTGGCGGAGC AGTCGCGCCAGGCGACCAACCAGGTACGCACCATCCTGGGGGACATCCAGAAGGCAACGATTGCGGCGGTGCTGGCGACC GAGCAAGGCAACAAGGCGGTGGAGGCGGGGAGCCGGCAGAGCGAAGTGGCAGGTGCATCGATCCAGGCGCTGGCTGGCAG TGTGACGGAGGCGGCGCAGGCGGCCACGCAGATCGCGGCGTCGAGCCAGCAGCAACTGGTGGGGGTGGACCAGGTGGCCG GCGCGATGGAGAGCATCAGGCAGGCGAGCACGCAGAACGTAGCCGGCGCCAGGCAGTTGGAGGTTGCGGCGCGCAACCTG GACGAACTCGGCCAGCGGCTCAAGCAGATGGTCGCGCTCTACACGGTGTGA
Upstream 100 bases:
>100_bases TCCGCGCGACCTTCCAGGTCAAAGCCACGGAGCATGAGCAGGCGATCGCAGCAGGTTTTCAGCCACGTGGAAAGCCGAAA AAAAAATGGAGGTCGGTGCC
Downstream 100 bases:
>100_bases GCGCGCAAGAGGAATCCCATGCAGGGAGGCGCTGCTTATAGAACTGGACTGTCGGGACGAAGGGCGCCGAGAGGGCTGCG TGCAAGCTGCACCAGTTGGG
Product: methyl-accepting chemotaxis sensory transducer
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 576; Mature: 576
Protein sequence:
>576_residues MKWNVGTKMGAGFGLAMVFFVIVGAVSYRSTTQLIEASDLRQHTYEVLSRLAEMELLSADMQNGLRGYVITGEEKYLEPY QTAVGKIDKILQEARKLTEDNLREQRRLDALEPLVKSRIDLARETIDAIRTKGEAAGVELIKTGKGRTLTSEIRKVIDEM EREEKDLLKQRAEAAQNDADNAKQIIVLGTLAALVFAALAGFVITRNIARPLQDLTAVAERITLGDLSVNVPVDDTRSDE VGALARTFDRMVQSLRAMASAAEQIAAGDLRSTIKPQSPDDVLGTAFARMSESLREQIRGLAEGANVLGSAASEIVASTT QLAASASQSAAAVSETTTTVEEVRQTAQVASQKAKQVSDSAQKAAQSSQSGRKSTEDVAAGMNRIRLQMEAIAASMARLS EQSQAIGRIMATVEDLAAQSNLLAVNAAIEAARAGEHGKGFGVVAQEVKSLAEQSRQATNQVRTILGDIQKATIAAVLAT EQGNKAVEAGSRQSEVAGASIQALAGSVTEAAQAATQIAASSQQQLVGVDQVAGAMESIRQASTQNVAGARQLEVAARNL DELGQRLKQMVALYTV
Sequences:
>Translated_576_residues MKWNVGTKMGAGFGLAMVFFVIVGAVSYRSTTQLIEASDLRQHTYEVLSRLAEMELLSADMQNGLRGYVITGEEKYLEPY QTAVGKIDKILQEARKLTEDNLREQRRLDALEPLVKSRIDLARETIDAIRTKGEAAGVELIKTGKGRTLTSEIRKVIDEM EREEKDLLKQRAEAAQNDADNAKQIIVLGTLAALVFAALAGFVITRNIARPLQDLTAVAERITLGDLSVNVPVDDTRSDE VGALARTFDRMVQSLRAMASAAEQIAAGDLRSTIKPQSPDDVLGTAFARMSESLREQIRGLAEGANVLGSAASEIVASTT QLAASASQSAAAVSETTTTVEEVRQTAQVASQKAKQVSDSAQKAAQSSQSGRKSTEDVAAGMNRIRLQMEAIAASMARLS EQSQAIGRIMATVEDLAAQSNLLAVNAAIEAARAGEHGKGFGVVAQEVKSLAEQSRQATNQVRTILGDIQKATIAAVLAT EQGNKAVEAGSRQSEVAGASIQALAGSVTEAAQAATQIAASSQQQLVGVDQVAGAMESIRQASTQNVAGARQLEVAARNL DELGQRLKQMVALYTV >Mature_576_residues MKWNVGTKMGAGFGLAMVFFVIVGAVSYRSTTQLIEASDLRQHTYEVLSRLAEMELLSADMQNGLRGYVITGEEKYLEPY QTAVGKIDKILQEARKLTEDNLREQRRLDALEPLVKSRIDLARETIDAIRTKGEAAGVELIKTGKGRTLTSEIRKVIDEM EREEKDLLKQRAEAAQNDADNAKQIIVLGTLAALVFAALAGFVITRNIARPLQDLTAVAERITLGDLSVNVPVDDTRSDE VGALARTFDRMVQSLRAMASAAEQIAAGDLRSTIKPQSPDDVLGTAFARMSESLREQIRGLAEGANVLGSAASEIVASTT QLAASASQSAAAVSETTTTVEEVRQTAQVASQKAKQVSDSAQKAAQSSQSGRKSTEDVAAGMNRIRLQMEAIAASMARLS EQSQAIGRIMATVEDLAAQSNLLAVNAAIEAARAGEHGKGFGVVAQEVKSLAEQSRQATNQVRTILGDIQKATIAAVLAT EQGNKAVEAGSRQSEVAGASIQALAGSVTEAAQAATQIAASSQQQLVGVDQVAGAMESIRQASTQNVAGARQLEVAARNL DELGQRLKQMVALYTV
Specific function: May bind attractants or detect changes in the extracellular concentration of soluble sugars [H]
COG id: COG0840
COG function: function code NT; Methyl-accepting chemotaxis protein
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI1788194, Length=336, Percent_Identity=29.4642857142857, Blast_Score=125, Evalue=9e-30, Organism=Escherichia coli, GI2367378, Length=341, Percent_Identity=31.3782991202346, Blast_Score=125, Evalue=1e-29, Organism=Escherichia coli, GI1788195, Length=285, Percent_Identity=30.5263157894737, Blast_Score=121, Evalue=1e-28, Organism=Escherichia coli, GI1787690, Length=537, Percent_Identity=24.5810055865922, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI1789453, Length=361, Percent_Identity=24.9307479224377, Blast_Score=92, Evalue=7e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004090 - InterPro: IPR004089 - InterPro: IPR003660 [H]
Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]
EC number: NA
Molecular weight: Translated: 61234; Mature: 61234
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKWNVGTKMGAGFGLAMVFFVIVGAVSYRSTTQLIEASDLRQHTYEVLSRLAEMELLSAD CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MQNGLRGYVITGEEKYLEPYQTAVGKIDKILQEARKLTEDNLREQRRLDALEPLVKSRID HHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LARETIDAIRTKGEAAGVELIKTGKGRTLTSEIRKVIDEMEREEKDLLKQRAEAAQNDAD HHHHHHHHHHHCCCHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NAKQIIVLGTLAALVFAALAGFVITRNIARPLQDLTAVAERITLGDLSVNVPVDDTRSDE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCH VGALARTFDRMVQSLRAMASAAEQIAAGDLRSTIKPQSPDDVLGTAFARMSESLREQIRG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH LAEGANVLGSAASEIVASTTQLAASASQSAAAVSETTTTVEEVRQTAQVASQKAKQVSDS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQKAAQSSQSGRKSTEDVAAGMNRIRLQMEAIAASMARLSEQSQAIGRIMATVEDLAAQS HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NLLAVNAAIEAARAGEHGKGFGVVAQEVKSLAEQSRQATNQVRTILGDIQKATIAAVLAT CCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQGNKAVEAGSRQSEVAGASIQALAGSVTEAAQAATQIAASSQQQLVGVDQVAGAMESIR CCCCHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH QASTQNVAGARQLEVAARNLDELGQRLKQMVALYTV HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKWNVGTKMGAGFGLAMVFFVIVGAVSYRSTTQLIEASDLRQHTYEVLSRLAEMELLSAD CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MQNGLRGYVITGEEKYLEPYQTAVGKIDKILQEARKLTEDNLREQRRLDALEPLVKSRID HHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LARETIDAIRTKGEAAGVELIKTGKGRTLTSEIRKVIDEMEREEKDLLKQRAEAAQNDAD HHHHHHHHHHHCCCHHCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NAKQIIVLGTLAALVFAALAGFVITRNIARPLQDLTAVAERITLGDLSVNVPVDDTRSDE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCH VGALARTFDRMVQSLRAMASAAEQIAAGDLRSTIKPQSPDDVLGTAFARMSESLREQIRG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH LAEGANVLGSAASEIVASTTQLAASASQSAAAVSETTTTVEEVRQTAQVASQKAKQVSDS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQKAAQSSQSGRKSTEDVAAGMNRIRLQMEAIAASMARLSEQSQAIGRIMATVEDLAAQS HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NLLAVNAAIEAARAGEHGKGFGVVAQEVKSLAEQSRQATNQVRTILGDIQKATIAAVLAT CCEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQGNKAVEAGSRQSEVAGASIQALAGSVTEAAQAATQIAASSQQQLVGVDQVAGAMESIR CCCCHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH QASTQNVAGARQLEVAARNLDELGQRLKQMVALYTV HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8436949 [H]