Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is ahpF [C]

Identifier: 91788202

GI number: 91788202

Start: 2431044

End: 2432144

Strand: Reverse

Name: ahpF [C]

Synonym: Bpro_2333

Alternate gene names: 91788202

Gene position: 2432144-2431044 (Counterclockwise)

Preceding gene: 91788203

Following gene: 91788201

Centisome position: 46.77

GC content: 55.22

Gene sequence:

>1101_bases
ATGGAACCTCAACTGAATCAAGAAGTGATCAACACCGCAGCACAGCACGATGGGCCGATCGAAACCGATGCGGTCATTGT
GGGCGCCGGTCCTGTCGGCCTTTTTCAGGTGTTCGAACTGGGCCTGTTGGAGATCAAGGCCCACGTGATCGATTCCCTCG
CCTATCCCGGCGGGCAATGCATTGAGCTCTATCCCGACAAACCGATTTATGACATTCCTGCAGTGCCCATGTGCACAGGC
AAAGAGCTGACCGACTCACTGCTCAAGCAGATCGAGCCGTTTGGCGCAACCTTTCACTTTGGACAGGAAGTCAGCGTTGT
CGAAAAGCAGGAAGACGGCCGCTTTTTTGTCGAGACGTCCAAAGGCACCAAATTCCTGACCAAAACGATTTTTATTGCGG
CCGGCGTGGGCGCTTTCCAGCCCAAGCTGCTGCGTGTCGACGGCCTCGATCAGTTTGACAATACCCAGCTGTTTTATCGC
GTCAAAAACCCGGCTGACTTTGCCGGCAAGAATCTGGTGATTGTTGGCGGGGGTGATTCCGCGCTTGACTGGGCTTTGAA
CTTTGTGGCTGAAGGCCCCAACAAGGCTGAAAGCGTGATCCTGGTTCACCGCCGTGACGGGTTCAAGGCGGCGCCTGCCA
GCGTGGCCAAAATGAAGGAACTCTGCGACGCGTACGAGATGCAGTTCATCGTCGGCCAGGTGACCGGCTACGATGAAAAA
AATGGAAAAATGACCGGCGCCAAGGTAACGGGCGCCGATGGCGTGACCCGCGTCGTACCGCTAGATGTGCTGCTGGTATT
TTTTGGCCTGAGCCCCAAGCTGGGACCCATTGCCCACTGGGGGCTGGATATCGAGCGCAAGCAGCTCATGGTGGACACTG
AAAAGTTTTCAACCAACATTCCTGGCATCTTTGCCGTGGGTGACATCAACACCTACCCCGGCAAGAAAAAACTGATTCTC
AGCGGATTTCACGAATGTGCCCTGGCCGCATTCGGTGCCGCTCCCTTTATTTTCCCGGACAAGAAAATCCATCTGCAATA
CACAACCACCAGTCCCAAGCTGCACAAGGTGCTGGGTGTCGAATCGCCGGTGTTTGACTGA

Upstream 100 bases:

>100_bases
AGACCGGAAAGCTGGACGAACTGGTGCGCTGAAACTCGCGCGCTGCCGGTCCCGCCCGAGCTATTTAGCCCGAGCTATTT
AATAAGCAAGTCAAGAAAAA

Downstream 100 bases:

>100_bases
ATCCCCTGGTAGATGCCTCCGAAAAAAAGCCCGCCGCGTGCGGGCTTTTTTGTGCCTGTGGATGGTTGCGCGGGACCTGC
CTGTCACCGCCCATCGAATT

Product: FAD-dependent pyridine nucleotide-disulfide oxidoreductase

Products: NA

Alternate protein names: FNR; Fd-NADP+ reductase [H]

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MEPQLNQEVINTAAQHDGPIETDAVIVGAGPVGLFQVFELGLLEIKAHVIDSLAYPGGQCIELYPDKPIYDIPAVPMCTG
KELTDSLLKQIEPFGATFHFGQEVSVVEKQEDGRFFVETSKGTKFLTKTIFIAAGVGAFQPKLLRVDGLDQFDNTQLFYR
VKNPADFAGKNLVIVGGGDSALDWALNFVAEGPNKAESVILVHRRDGFKAAPASVAKMKELCDAYEMQFIVGQVTGYDEK
NGKMTGAKVTGADGVTRVVPLDVLLVFFGLSPKLGPIAHWGLDIERKQLMVDTEKFSTNIPGIFAVGDINTYPGKKKLIL
SGFHECALAAFGAAPFIFPDKKIHLQYTTTSPKLHKVLGVESPVFD

Sequences:

>Translated_366_residues
MEPQLNQEVINTAAQHDGPIETDAVIVGAGPVGLFQVFELGLLEIKAHVIDSLAYPGGQCIELYPDKPIYDIPAVPMCTG
KELTDSLLKQIEPFGATFHFGQEVSVVEKQEDGRFFVETSKGTKFLTKTIFIAAGVGAFQPKLLRVDGLDQFDNTQLFYR
VKNPADFAGKNLVIVGGGDSALDWALNFVAEGPNKAESVILVHRRDGFKAAPASVAKMKELCDAYEMQFIVGQVTGYDEK
NGKMTGAKVTGADGVTRVVPLDVLLVFFGLSPKLGPIAHWGLDIERKQLMVDTEKFSTNIPGIFAVGDINTYPGKKKLIL
SGFHECALAAFGAAPFIFPDKKIHLQYTTTSPKLHKVLGVESPVFD
>Mature_366_residues
MEPQLNQEVINTAAQHDGPIETDAVIVGAGPVGLFQVFELGLLEIKAHVIDSLAYPGGQCIELYPDKPIYDIPAVPMCTG
KELTDSLLKQIEPFGATFHFGQEVSVVEKQEDGRFFVETSKGTKFLTKTIFIAAGVGAFQPKLLRVDGLDQFDNTQLFYR
VKNPADFAGKNLVIVGGGDSALDWALNFVAEGPNKAESVILVHRRDGFKAAPASVAKMKELCDAYEMQFIVGQVTGYDEK
NGKMTGAKVTGADGVTRVVPLDVLLVFFGLSPKLGPIAHWGLDIERKQLMVDTEKFSTNIPGIFAVGDINTYPGKKKLIL
SGFHECALAAFGAAPFIFPDKKIHLQYTTTSPKLHKVLGVESPVFD

Specific function: Serves To Protect The Cell Against DNA Damage By Alkyl Hydroperoxides. It Can Use Either NADH Or NADPH As Electron Donor For Direct Reduction Of Redox Dyes Or Of Alkyl Hydroperoxides When Combined With The Ahpc Protein. [C]

COG id: COG0492

COG function: function code O; Thioredoxin reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ferredoxin--NADP reductase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR022890
- InterPro:   IPR000103 [H]

Pfam domain/function: PF07992 Pyr_redox_2 [H]

EC number: =1.18.1.2 [H]

Molecular weight: Translated: 39732; Mature: 39732

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPQLNQEVINTAAQHDGPIETDAVIVGAGPVGLFQVFELGLLEIKAHVIDSLAYPGGQC
CCCCCCHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
IELYPDKPIYDIPAVPMCTGKELTDSLLKQIEPFGATFHFGQEVSVVEKQEDGRFFVETS
EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCCEEEEEEC
KGTKFLTKTIFIAAGVGAFQPKLLRVDGLDQFDNTQLFYRVKNPADFAGKNLVIVGGGDS
CCCCHHHHEEHEEECCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCH
ALDWALNFVAEGPNKAESVILVHRRDGFKAAPASVAKMKELCDAYEMQFIVGQVTGYDEK
HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCC
NGKMTGAKVTGADGVTRVVPLDVLLVFFGLSPKLGPIAHWGLDIERKQLMVDTEKFSTNI
CCEEECEEEECCCCCEEHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHEEEEHHHHCCCC
PGIFAVGDINTYPGKKKLILSGFHECALAAFGAAPFIFPDKKIHLQYTTTSPKLHKVLGV
CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCEEEEEEECCCCHHHHHHCC
ESPVFD
CCCCCC
>Mature Secondary Structure
MEPQLNQEVINTAAQHDGPIETDAVIVGAGPVGLFQVFELGLLEIKAHVIDSLAYPGGQC
CCCCCCHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
IELYPDKPIYDIPAVPMCTGKELTDSLLKQIEPFGATFHFGQEVSVVEKQEDGRFFVETS
EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCCEEEEEEC
KGTKFLTKTIFIAAGVGAFQPKLLRVDGLDQFDNTQLFYRVKNPADFAGKNLVIVGGGDS
CCCCHHHHEEHEEECCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCH
ALDWALNFVAEGPNKAESVILVHRRDGFKAAPASVAKMKELCDAYEMQFIVGQVTGYDEK
HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCC
NGKMTGAKVTGADGVTRVVPLDVLLVFFGLSPKLGPIAHWGLDIERKQLMVDTEKFSTNI
CCEEECEEEECCCCCEEHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHEEEEHHHHCCCC
PGIFAVGDINTYPGKKKLILSGFHECALAAFGAAPFIFPDKKIHLQYTTTSPKLHKVLGV
CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCEEEEEEECCCCHHHHHHCC
ESPVFD
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA