| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is fdxA [H]
Identifier: 91788203
GI number: 91788203
Start: 2432213
End: 2432542
Strand: Reverse
Name: fdxA [H]
Synonym: Bpro_2334
Alternate gene names: 91788203
Gene position: 2432542-2432213 (Counterclockwise)
Preceding gene: 91788204
Following gene: 91788202
Centisome position: 46.78
GC content: 58.48
Gene sequence:
>330_bases ATGACACACATCGTCTCCGAATCCTGCATCCGCTGCAAATACACCGACTGTGTTGACGTTTGCCCCGTGGACTGCTTCCG CGAAGGCCCCAACATGCTGGTGATTGATCCGGACGAGTGCATTGATTGCGCCGTGTGCATTCCGGAATGCCCCGTCAACG CCATCTATGCCGAGGAAGATGTGCCGGCCGACCAGCTGCAGTTCATCAAGCTCAATGCCGAACTGAGCCGCGCCGCAGGA TGGAAAAGCATCACCAAGCGCAAGGACGCCCTGCCCGACGCGGAAGAGTGGAAAGACAAGACCGGAAAGCTGGACGAACT GGTGCGCTGA
Upstream 100 bases:
>100_bases CTGGTTCTTTAAGCTGCCAAGGCCCTTTCAATTCACTGCTTCAACGCTGCTACTGGAAACCTCTTAAAATCAAGGGTTTC CACCGATCAGCCAATACAAC
Downstream 100 bases:
>100_bases AACTCGCGCGCTGCCGGTCCCGCCCGAGCTATTTAGCCCGAGCTATTTAATAAGCAAGTCAAGAAAAAATGGAACCTCAA CTGAATCAAGAAGTGATCAA
Product: 4Fe-4S ferredoxin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 109; Mature: 108
Protein sequence:
>109_residues MTHIVSESCIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEEDVPADQLQFIKLNAELSRAAG WKSITKRKDALPDAEEWKDKTGKLDELVR
Sequences:
>Translated_109_residues MTHIVSESCIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEEDVPADQLQFIKLNAELSRAAG WKSITKRKDALPDAEEWKDKTGKLDELVR >Mature_108_residues THIVSESCIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEEDVPADQLQFIKLNAELSRAAGW KSITKRKDALPDAEEWKDKTGKLDELVR
Specific function: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions [H]
COG id: COG1146
COG function: function code C; Ferredoxin
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR000813 - InterPro: IPR022569 [H]
Pfam domain/function: PF11953 DUF3470 [H]
EC number: NA
Molecular weight: Translated: 12249; Mature: 12118
Theoretical pI: Translated: 4.25; Mature: 4.25
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
8.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 10.1 %Cys+Met (Translated Protein) 8.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 9.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHIVSESCIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEED CCCCCCCCCCEECCCCCCCCCCCHHHHCCCCEEEECCHHHCEEEEECCCCCCCEEECCCC VPADQLQFIKLNAELSRAAGWKSITKRKDALPDAEEWKDKTGKLDELVR CCCCCEEEEEECCHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCHHHHCC >Mature Secondary Structure THIVSESCIRCKYTDCVDVCPVDCFREGPNMLVIDPDECIDCAVCIPECPVNAIYAEED CCCCCCCCCEECCCCCCCCCCCHHHHCCCCEEEECCHHHCEEEEECCCCCCCEEECCCC VPADQLQFIKLNAELSRAAGWKSITKRKDALPDAEEWKDKTGKLDELVR CCCCCEEEEEECCHHHHHCCHHHHHHHHHCCCCHHHHHHHCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12534463 [H]