| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is ybaL [H]
Identifier: 91788022
GI number: 91788022
Start: 2239745
End: 2241448
Strand: Direct
Name: ybaL [H]
Synonym: Bpro_2149
Alternate gene names: 91788022
Gene position: 2239745-2241448 (Clockwise)
Preceding gene: 91788021
Following gene: 91788026
Centisome position: 43.07
GC content: 62.62
Gene sequence:
>1704_bases ATGCCCCATAGCGTCTCCCTCATCAGCACTATCGCCGCCGGCCTGGGTCTGGCTTTGATCTTTGGCTTTGCGGCTGCACG GCTTCGCTTGCCCGCCATCGTTGGCTATCTGCTGGCAGGGGTGATCATCGGGCCCTTCACGCCGGGTTTTGTGGCCGATA CCGGGATTGCCAGCCAGCTTGCCGAGATTGGCGTGATGCTGCTGATGTTTGGTGTCGGTCTGCATTTTTCGCTGGATGAT TTGCTGGCGGTACGCAAGATTGCCGTGCCCGGCGCTGTGGTGCAGATGACTGTGGCGACTGCGCTGGGTATGGGGCTGGC GCACTGGTGGGGCTGGAACCTGGGCGGCGCGCTGGTGTTCGGGCTTTCGCTGTCGGTGGCCAGTACGGTGGTGTTGCTCC GCGCGCTTGAGAGTCGGGGGATTCTTGATTCCGTCAACGGGCGCATTGCCGTGGGCTGGCTCGTGGTGGAAGACCTGGCC ATGGTGCTGGTGCTGGTCTTGTTGCCGCCGCTGGGCAGCTGGCTATCTGGTAAAACCGATGCCTCCGCCGATGTCAACAT GCTGTGGAAAACGCTGGGCATGACGATGTTGCAGGTCGGCGGTTTTGTCGCGCTGATGCTGGTCGTGGGGCGGCGGTTTT TTCCGTGGGTGCTGTGGCATGTACAGCGCACGGGTTCGCGTGAGCTCTTTACCTTGTGCGTGGTGGCGGCAGCCGTCAGC ATTGCGTTTGGTGCGACGGCGCTGTTTGGCGTGTCGTTTGCGCTGGGCGCATTTTTTGCCGGCATGGTGATGCGCGAGTC CGAGTTCAGTCACCGTGCCGCAGAAGAGTCGCTGCCGCTGCGTGACGCTTTTGCGGTGCTGTTCTTTGTTTCGGTCGGCA TGCTGTTTGACCCCTGGGTGCTTCTGGAGCGTCCGCTGCAGGTGCTGGCGGTGGTGGGCATCATCATTGTCGGCAAATCG CTGGCGGCCGGCCTGCTCGTCGTGGCGTTTCGCTACCCGCTCAATACCGCGCTCACGGTGTCTGCCAGCCTGGCGCAGAT CGGTGAATTTTCTTTCATCCTGGTGGCCCTGGGTGCGTCGCTTGGACTGCTGCCGCCGGAGGGGCAAAGCCTGGTGCTGG CCGGGGCGCTGATCTCGATTGCGCTGAACCAGCTGGTCTTCAAGGCGGTTGAACCTTTTCAGCAATGGATACTGGGCAAG TCCGCACTGGCGCGCAAACTGGAAGCACGTGACGACCCGACGGCCCAGCTGCCGGCCAGCACTGAAGCGAAGTATCTCTC GCACCATGTGGTGCTGGTCGGTTATGGGCGGGTAGGGCGGCGCATCGCGGAGGCGCTTGGGGCCCACCACATCCCTTTTG TCGTGGCCGAGCAAAACCGCGAGGCGGTTGAACGGCTGCGGGAGCAGGGGCTGCCTGCGGTCTCAGGTGATGCGTCGGAG CCTGATGTGCTGATTCAGGCGCATATCGCGCAAGCCCGCATGCTGGTGATTGCCACACCTGACACGCTCGATGTGCGGCA GATGATTGCGACGGCCCGGGCGCTTAACCCGGCGATTGAAACAGTGGTGCGCACACACAACGAGGCGGAGGCCAAGCTGC TGGATCAGGAAAATGCTGGTAAGGTGTTTCTGGGGGAGCATGAGTTGGCACAGGCGATGACGCGCCATGTGCTGGAGCGC TCCGCCGCCAGTGCTGCACATTAG
Upstream 100 bases:
>100_bases TTGTTTCCTTCTGACTGTAGTAAATTAGATCGGCGCACTGCCTTGCGCGGCTTTCGTTCGCGCCCGCCTCTTCGCCTCTT GTTGAAGGAACCCCTCCCGC
Downstream 100 bases:
>100_bases CGGAGGCTTTTAAGCCCGCACACGAACGAAGCGCGGCGGATCACACCGCTGAACGCACCAGGTCCCTGCAGACGTGGGGT TGCTCATGAAGCAGCGTGGT
Product: sodium/hydrogen exchanger
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 567; Mature: 566
Protein sequence:
>567_residues MPHSVSLISTIAAGLGLALIFGFAAARLRLPAIVGYLLAGVIIGPFTPGFVADTGIASQLAEIGVMLLMFGVGLHFSLDD LLAVRKIAVPGAVVQMTVATALGMGLAHWWGWNLGGALVFGLSLSVASTVVLLRALESRGILDSVNGRIAVGWLVVEDLA MVLVLVLLPPLGSWLSGKTDASADVNMLWKTLGMTMLQVGGFVALMLVVGRRFFPWVLWHVQRTGSRELFTLCVVAAAVS IAFGATALFGVSFALGAFFAGMVMRESEFSHRAAEESLPLRDAFAVLFFVSVGMLFDPWVLLERPLQVLAVVGIIIVGKS LAAGLLVVAFRYPLNTALTVSASLAQIGEFSFILVALGASLGLLPPEGQSLVLAGALISIALNQLVFKAVEPFQQWILGK SALARKLEARDDPTAQLPASTEAKYLSHHVVLVGYGRVGRRIAEALGAHHIPFVVAEQNREAVERLREQGLPAVSGDASE PDVLIQAHIAQARMLVIATPDTLDVRQMIATARALNPAIETVVRTHNEAEAKLLDQENAGKVFLGEHELAQAMTRHVLER SAASAAH
Sequences:
>Translated_567_residues MPHSVSLISTIAAGLGLALIFGFAAARLRLPAIVGYLLAGVIIGPFTPGFVADTGIASQLAEIGVMLLMFGVGLHFSLDD LLAVRKIAVPGAVVQMTVATALGMGLAHWWGWNLGGALVFGLSLSVASTVVLLRALESRGILDSVNGRIAVGWLVVEDLA MVLVLVLLPPLGSWLSGKTDASADVNMLWKTLGMTMLQVGGFVALMLVVGRRFFPWVLWHVQRTGSRELFTLCVVAAAVS IAFGATALFGVSFALGAFFAGMVMRESEFSHRAAEESLPLRDAFAVLFFVSVGMLFDPWVLLERPLQVLAVVGIIIVGKS LAAGLLVVAFRYPLNTALTVSASLAQIGEFSFILVALGASLGLLPPEGQSLVLAGALISIALNQLVFKAVEPFQQWILGK SALARKLEARDDPTAQLPASTEAKYLSHHVVLVGYGRVGRRIAEALGAHHIPFVVAEQNREAVERLREQGLPAVSGDASE PDVLIQAHIAQARMLVIATPDTLDVRQMIATARALNPAIETVVRTHNEAEAKLLDQENAGKVFLGEHELAQAMTRHVLER SAASAAH >Mature_566_residues PHSVSLISTIAAGLGLALIFGFAAARLRLPAIVGYLLAGVIIGPFTPGFVADTGIASQLAEIGVMLLMFGVGLHFSLDDL LAVRKIAVPGAVVQMTVATALGMGLAHWWGWNLGGALVFGLSLSVASTVVLLRALESRGILDSVNGRIAVGWLVVEDLAM VLVLVLLPPLGSWLSGKTDASADVNMLWKTLGMTMLQVGGFVALMLVVGRRFFPWVLWHVQRTGSRELFTLCVVAAAVSI AFGATALFGVSFALGAFFAGMVMRESEFSHRAAEESLPLRDAFAVLFFVSVGMLFDPWVLLERPLQVLAVVGIIIVGKSL AAGLLVVAFRYPLNTALTVSASLAQIGEFSFILVALGASLGLLPPEGQSLVLAGALISIALNQLVFKAVEPFQQWILGKS ALARKLEARDDPTAQLPASTEAKYLSHHVVLVGYGRVGRRIAEALGAHHIPFVVAEQNREAVERLREQGLPAVSGDASEP DVLIQAHIAQARMLVIATPDTLDVRQMIATARALNPAIETVVRTHNEAEAKLLDQENAGKVFLGEHELAQAMTRHVLERS AASAAH
Specific function: Unknown
COG id: COG4651
COG function: function code P; Kef-type K+ transport system, predicted NAD-binding component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RCK N-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI157388921, Length=380, Percent_Identity=26.5789473684211, Blast_Score=100, Evalue=3e-21, Organism=Escherichia coli, GI1786685, Length=555, Percent_Identity=52.2522522522522, Blast_Score=519, Evalue=1e-148, Organism=Escherichia coli, GI1789749, Length=514, Percent_Identity=29.3774319066148, Blast_Score=167, Evalue=2e-42, Organism=Escherichia coli, GI1786232, Length=508, Percent_Identity=28.3464566929134, Blast_Score=160, Evalue=2e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006153 - InterPro: IPR004771 - InterPro: IPR016040 - InterPro: IPR003148 [H]
Pfam domain/function: PF00999 Na_H_Exchanger; PF02254 TrkA_N [H]
EC number: NA
Molecular weight: Translated: 60199; Mature: 60067
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHSVSLISTIAAGLGLALIFGFAAARLRLPAIVGYLLAGVIIGPFTPGFVADTGIASQL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHH AEIGVMLLMFGVGLHFSLDDLLAVRKIAVPGAVVQMTVATALGMGLAHWWGWNLGGALVF HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH GLSLSVASTVVLLRALESRGILDSVNGRIAVGWLVVEDLAMVLVLVLLPPLGSWLSGKTD HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHCCCCC ASADVNMLWKTLGMTMLQVGGFVALMLVVGRRFFPWVLWHVQRTGSRELFTLCVVAAAVS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IAFGATALFGVSFALGAFFAGMVMRESEFSHRAAEESLPLRDAFAVLFFVSVGMLFDPWV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHH LLERPLQVLAVVGIIIVGKSLAAGLLVVAFRYPLNTALTVSASLAQIGEFSFILVALGAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHH LGLLPPEGQSLVLAGALISIALNQLVFKAVEPFQQWILGKSALARKLEARDDPTAQLPAS CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCC TEAKYLSHHVVLVGYGRVGRRIAEALGAHHIPFVVAEQNREAVERLREQGLPAVSGDASE CHHHHHHCEEEEEECCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCC PDVLIQAHIAQARMLVIATPDTLDVRQMIATARALNPAIETVVRTHNEAEAKLLDQENAG CCHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC KVFLGEHELAQAMTRHVLERSAASAAH CEEECHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PHSVSLISTIAAGLGLALIFGFAAARLRLPAIVGYLLAGVIIGPFTPGFVADTGIASQL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHH AEIGVMLLMFGVGLHFSLDDLLAVRKIAVPGAVVQMTVATALGMGLAHWWGWNLGGALVF HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH GLSLSVASTVVLLRALESRGILDSVNGRIAVGWLVVEDLAMVLVLVLLPPLGSWLSGKTD HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHCCCCC ASADVNMLWKTLGMTMLQVGGFVALMLVVGRRFFPWVLWHVQRTGSRELFTLCVVAAAVS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IAFGATALFGVSFALGAFFAGMVMRESEFSHRAAEESLPLRDAFAVLFFVSVGMLFDPWV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHH LLERPLQVLAVVGIIIVGKSLAAGLLVVAFRYPLNTALTVSASLAQIGEFSFILVALGAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHH LGLLPPEGQSLVLAGALISIALNQLVFKAVEPFQQWILGKSALARKLEARDDPTAQLPAS CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCC TEAKYLSHHVVLVGYGRVGRRIAEALGAHHIPFVVAEQNREAVERLREQGLPAVSGDASE CHHHHHHCEEEEEECCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCC PDVLIQAHIAQARMLVIATPDTLDVRQMIATARALNPAIETVVRTHNEAEAKLLDQENAG CCHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC KVFLGEHELAQAMTRHVLERSAASAAH CEEECHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503; 7721718 [H]