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The map label for this gene is ydhC [H]

Identifier: 91788007

GI number: 91788007

Start: 2225494

End: 2226216

Strand: Direct

Name: ydhC [H]

Synonym: Bpro_2134

Alternate gene names: 91788007

Gene position: 2225494-2226216 (Clockwise)

Preceding gene: 91788002

Following gene: 91788009

Centisome position: 42.8

GC content: 65.42

Gene sequence:

>723_bases
ATGAGCTTGCAAGAAACGGTTTTGATGCAGTTACGGGACCTGATCCTGCGCGGGGAATTCGCGCCCGGCCAGCGTCTGGC
CGAGCAGCAACTGGCTGAGCGCCTGGGTGCCTCACGCACGCCGGTGCGGGCCGCGCTGGTCACGCTGGAGCAGGAAGGGC
TGGTGGAGGCCAACGACACGGGCAAATACCTGGTGCGCCAGTTCACACCGCGCGAAGTGGCCGATGCGATTGCCGTGCGC
GGCCATCTTGAAGGCATGGCCGCGCGCCTGGTGGCTGAGCATGGGGTTTCTCGCCAGCTGCAGCTCGACCTGCAGTCCTG
CCTCGACGAAGGCGACCGCGCGCTGGCGCCCAATCCGCTGGCTTATGAAAACTACGCGGCCTATGCCGTCATGAACGACC
GCTTCCATGCGCTGATCCTGGAGGCCAGCGGCAACCGCGCCCTGCAGCGTGCCATCGAACTCAATGACAAGCTGCCTTTT
GCTTCAGCGTCGGCCATGCTGCCGATGCAATCCACATTGGAGCAGGACCGCGACTGGATGCATTACGCGCACCGCCAGCA
CCATATGCTGTTTGCCGCCCTCAAGGCCGGCGAAGGCGCGCGTGCCCAGGCCCTGGCCGTGGAGCATACGGAAGTGGCCC
AGATGAACATGCGCATGGCGCTGGAGCGGCGGGCCGAAACCGAACACCTGATGCCGGGCCTGCGTCTGGTGGTGGGGCGG
TAA

Upstream 100 bases:

>100_bases
TTTTGTTCTGCATTCATGGATGTCCTGCGGGATGGGGGTGATCAGGTGGGGGGTGTGAAAACGGTATACCGAAATTTGAA
TTCAGTGTACAGTCATCATC

Downstream 100 bases:

>100_bases
GCTAGGTCAGAGGCTGCTCCCAAGGCGGTGCGCCTGGTCCGCGCAGGCAAGTAGCCGGCAGGCAGGACGCGCAGCGCGTT
TACCTGCTTACTCTTTGGCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSLQETVLMQLRDLILRGEFAPGQRLAEQQLAERLGASRTPVRAALVTLEQEGLVEANDTGKYLVRQFTPREVADAIAVR
GHLEGMAARLVAEHGVSRQLQLDLQSCLDEGDRALAPNPLAYENYAAYAVMNDRFHALILEASGNRALQRAIELNDKLPF
ASASAMLPMQSTLEQDRDWMHYAHRQHHMLFAALKAGEGARAQALAVEHTEVAQMNMRMALERRAETEHLMPGLRLVVGR

Sequences:

>Translated_240_residues
MSLQETVLMQLRDLILRGEFAPGQRLAEQQLAERLGASRTPVRAALVTLEQEGLVEANDTGKYLVRQFTPREVADAIAVR
GHLEGMAARLVAEHGVSRQLQLDLQSCLDEGDRALAPNPLAYENYAAYAVMNDRFHALILEASGNRALQRAIELNDKLPF
ASASAMLPMQSTLEQDRDWMHYAHRQHHMLFAALKAGEGARAQALAVEHTEVAQMNMRMALERRAETEHLMPGLRLVVGR
>Mature_239_residues
SLQETVLMQLRDLILRGEFAPGQRLAEQQLAERLGASRTPVRAALVTLEQEGLVEANDTGKYLVRQFTPREVADAIAVRG
HLEGMAARLVAEHGVSRQLQLDLQSCLDEGDRALAPNPLAYENYAAYAVMNDRFHALILEASGNRALQRAIELNDKLPFA
SASAMLPMQSTLEQDRDWMHYAHRQHHMLFAALKAGEGARAQALAVEHTEVAQMNMRMALERRAETEHLMPGLRLVVGR

Specific function: Activator For The Glycolate Oxidation Locus. [C]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26755; Mature: 26624

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLQETVLMQLRDLILRGEFAPGQRLAEQQLAERLGASRTPVRAALVTLEQEGLVEANDT
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHEEHHCCCCEECCCC
GKYLVRQFTPREVADAIAVRGHLEGMAARLVAEHGVSRQLQLDLQSCLDEGDRALAPNPL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC
AYENYAAYAVMNDRFHALILEASGNRALQRAIELNDKLPFASASAMLPMQSTLEQDRDWM
CCCCEEEEEEECCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHH
HYAHRQHHMLFAALKAGEGARAQALAVEHTEVAQMNMRMALERRAETEHLMPGLRLVVGR
HHHHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCC
>Mature Secondary Structure 
SLQETVLMQLRDLILRGEFAPGQRLAEQQLAERLGASRTPVRAALVTLEQEGLVEANDT
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHEEHHCCCCEECCCC
GKYLVRQFTPREVADAIAVRGHLEGMAARLVAEHGVSRQLQLDLQSCLDEGDRALAPNPL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC
AYENYAAYAVMNDRFHALILEASGNRALQRAIELNDKLPFASASAMLPMQSTLEQDRDWM
CCCCEEEEEEECCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHH
HYAHRQHHMLFAALKAGEGARAQALAVEHTEVAQMNMRMALERRAETEHLMPGLRLVVGR
HHHHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]