| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is hosA [H]
Identifier: 91788002
GI number: 91788002
Start: 2221247
End: 2221693
Strand: Direct
Name: hosA [H]
Synonym: Bpro_2129
Alternate gene names: 91788002
Gene position: 2221247-2221693 (Clockwise)
Preceding gene: 91787993
Following gene: 91788007
Centisome position: 42.71
GC content: 63.09
Gene sequence:
>447_bases ATGGCAAAAAGCTTTGATTTCAGCGACGCCCCGGGGCACCTCATTCGCCGGGCACAACAACTTGCAGTGGCGATCTTCAT GGAGGAGACGGCGGGTTTTGACGCGACGCCGGTGCAGTTTGCCATCCTGAACGCGCTGATGGATGACCCTGGCGAAGATC AGATCACGCTGTCAGGGCGGGTGGCGTTCGACCCGGCCACTTTTGGCTCGGTGATCGGGCGGCTTGAAGCCAAAGGCTGG GTCAAGCGCGAGGCGGATCCGGGCGACAGGCGCCGCAAACTGCTGTGGATCACGCCCGAAGGGGAGAAGGTTGCGCTGCA GATGAAACGCGCGGTGAACCGGGCCCAGCAGCGCATTGTGGGCCCACTGGATCCTGACGAGCGGGCACAACTGGGCGCGC TGCTCGGCAAGATGATCGCCGGGCACGAAAAAGCTGCCAGGCAATGA
Upstream 100 bases:
>100_bases GGTTCGGGAATAGCCCGGGAAATACCAGGGCGCCCCTAAATGATAAGTATACATATCATTTATCGACTTGGTATTTACCC TGAACGTTTAAACTCCGCAC
Downstream 100 bases:
>100_bases TGGCATCTCAATGATGGCATTCTGAAGGCAGTAAATAAGAAAGACAAAGAAAAGCGGGGCAGAACAACCCCGCTTTTTTT GGTCGAACGGTTGGCTCAGG
Product: MarR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 148; Mature: 147
Protein sequence:
>148_residues MAKSFDFSDAPGHLIRRAQQLAVAIFMEETAGFDATPVQFAILNALMDDPGEDQITLSGRVAFDPATFGSVIGRLEAKGW VKREADPGDRRRKLLWITPEGEKVALQMKRAVNRAQQRIVGPLDPDERAQLGALLGKMIAGHEKAARQ
Sequences:
>Translated_148_residues MAKSFDFSDAPGHLIRRAQQLAVAIFMEETAGFDATPVQFAILNALMDDPGEDQITLSGRVAFDPATFGSVIGRLEAKGW VKREADPGDRRRKLLWITPEGEKVALQMKRAVNRAQQRIVGPLDPDERAQLGALLGKMIAGHEKAARQ >Mature_147_residues AKSFDFSDAPGHLIRRAQQLAVAIFMEETAGFDATPVQFAILNALMDDPGEDQITLSGRVAFDPATFGSVIGRLEAKGWV KREADPGDRRRKLLWITPEGEKVALQMKRAVNRAQQRIVGPLDPDERAQLGALLGKMIAGHEKAARQ
Specific function: Involved in the temperature-dependent positive control of flagellum-driven swimming motility and cellular aggregation. Regulates fliC expression by directly interacting with fliC promoter [H]
COG id: COG1846
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH marR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000835 - InterPro: IPR023187 - InterPro: IPR011991 [H]
Pfam domain/function: PF01047 MarR [H]
EC number: NA
Molecular weight: Translated: 16251; Mature: 16120
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: PS50995 HTH_MARR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKSFDFSDAPGHLIRRAQQLAVAIFMEETAGFDATPVQFAILNALMDDPGEDQITLSGR CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEECCE VAFDPATFGSVIGRLEAKGWVKREADPGDRRRKLLWITPEGEKVALQMKRAVNRAQQRIV EEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC GPLDPDERAQLGALLGKMIAGHEKAARQ CCCCCCHHHHHHHHHHHHHHCCHHHCCC >Mature Secondary Structure AKSFDFSDAPGHLIRRAQQLAVAIFMEETAGFDATPVQFAILNALMDDPGEDQITLSGR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEECCE VAFDPATFGSVIGRLEAKGWVKREADPGDRRRKLLWITPEGEKVALQMKRAVNRAQQRIV EEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCC GPLDPDERAQLGALLGKMIAGHEKAARQ CCCCCCHHHHHHHHHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10986240 [H]