| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is gbh [H]
Identifier: 91787901
GI number: 91787901
Start: 2095769
End: 2096830
Strand: Direct
Name: gbh [H]
Synonym: Bpro_2025
Alternate gene names: 91787901
Gene position: 2095769-2096830 (Clockwise)
Preceding gene: 91787900
Following gene: 91787902
Centisome position: 40.3
GC content: 65.35
Gene sequence:
>1062_bases ATGACTACCAACGCAGAACATTTGGCCAGGTTGCGGGCCCGTTATGCCGGCGCTTCGGGCGCCGACATGTTTGACCCGGC ATTCAAGGCCGTCGCTGAACAGATCTTCAGCAGCTCGGACCGCCGCAAGTGGCCGTTTGCCGACGTCCCCACATTTCTCG ATGCCCCTTATCGCGCGGATGGCTTGGCCCAGCCCGAGCCGAATCTGGCGGGCCTCGATGTGGCCTTGATCGGCGTGCCG ATGGACCTGGGCGTGACCAACCGCGCCGGGGCCCGCCTGGGGCCGCGGGCCGTGCGCAATGTGGAGCGTATCGGGCCTTA CGAGCATGCGCTGGGCCTGGCGCCGGTGACCCGCTTGAAGATGGCTGACGTGGGCGATGTGCCCATGCGCAGCCGTTTCA GCCTGGACGAATGCCATGCCGACATCGAGGCCTGCTTCAACCAGGTTGTGAACGCGGGTGTGATTCCGCTGGCTGTGGGC GGTGACCATTCGATCACGGGCTCCATCCTGAAAGCGGTGGGACGCGACCGGCCGGTGGGCATGGTGCATATTGATGCCCA CTGTGACACCGCCGGAACCTACGAGGGCTCCAAATTTCACCACGGCGGGCCCTTTCGGGAAGCGGTGCTGGCCGGCGTGC TGGATCCGCGCCGCTGCATCCAGATTGGCATTCGGGGCGGGGCCGAGTATTTGTGGGAGTTTTCGTTTGACTCCGGAATG ACCGTCATCCATGCCGAAGAGTTCTCCAAAATGGGCGTGGAAGCCGTGATCCGGCGCGCCCGCGAAGTGGTGGGCGACGG CCCGACCTATGTGACGTTTGACGTGGACAGCCTGGACCCCGCGTATGCGCCGGGCACGGGCACGCCCGAGGTCGGCGGCC TGAGCCCGCGCGAAGTGCTCACCTTGCTGCGCGGCCTGGCGGGCCTGAACATTGTCGGCGGTGACGTGATGGAGGTCGCT CCACAGAACGACCCCTCCGGCAACACGGCCCTGGTGGGCGCGCAGATGCTGTTCGAGATACTGTGCCTGGTTGCATTGTC GCCAGCCATGGCGAACCGATAA
Upstream 100 bases:
>100_bases CGCGGCTGTGCCTGGACCGGCTGTCGCGCGGCAGCGCGGCGCCGCAGGCGTGAGCGGCGGCAGCCCGATTTTTTCCAACA TGAACCATTCCATGCATTCC
Downstream 100 bases:
>100_bases GCGGCTAGGCGTCACCTCCTTATTTATTTCTATTTCTATTTCTCTTTCTCTTTCTCTTTACTCTTTACTCTTTACTCTTC AGGAACATCATGACCATCCA
Product: agmatinase
Products: NA
Alternate protein names: GBase; D-arginase [H]
Number of amino acids: Translated: 353; Mature: 352
Protein sequence:
>353_residues MTTNAEHLARLRARYAGASGADMFDPAFKAVAEQIFSSSDRRKWPFADVPTFLDAPYRADGLAQPEPNLAGLDVALIGVP MDLGVTNRAGARLGPRAVRNVERIGPYEHALGLAPVTRLKMADVGDVPMRSRFSLDECHADIEACFNQVVNAGVIPLAVG GDHSITGSILKAVGRDRPVGMVHIDAHCDTAGTYEGSKFHHGGPFREAVLAGVLDPRRCIQIGIRGGAEYLWEFSFDSGM TVIHAEEFSKMGVEAVIRRAREVVGDGPTYVTFDVDSLDPAYAPGTGTPEVGGLSPREVLTLLRGLAGLNIVGGDVMEVA PQNDPSGNTALVGAQMLFEILCLVALSPAMANR
Sequences:
>Translated_353_residues MTTNAEHLARLRARYAGASGADMFDPAFKAVAEQIFSSSDRRKWPFADVPTFLDAPYRADGLAQPEPNLAGLDVALIGVP MDLGVTNRAGARLGPRAVRNVERIGPYEHALGLAPVTRLKMADVGDVPMRSRFSLDECHADIEACFNQVVNAGVIPLAVG GDHSITGSILKAVGRDRPVGMVHIDAHCDTAGTYEGSKFHHGGPFREAVLAGVLDPRRCIQIGIRGGAEYLWEFSFDSGM TVIHAEEFSKMGVEAVIRRAREVVGDGPTYVTFDVDSLDPAYAPGTGTPEVGGLSPREVLTLLRGLAGLNIVGGDVMEVA PQNDPSGNTALVGAQMLFEILCLVALSPAMANR >Mature_352_residues TTNAEHLARLRARYAGASGADMFDPAFKAVAEQIFSSSDRRKWPFADVPTFLDAPYRADGLAQPEPNLAGLDVALIGVPM DLGVTNRAGARLGPRAVRNVERIGPYEHALGLAPVTRLKMADVGDVPMRSRFSLDECHADIEACFNQVVNAGVIPLAVGG DHSITGSILKAVGRDRPVGMVHIDAHCDTAGTYEGSKFHHGGPFREAVLAGVLDPRRCIQIGIRGGAEYLWEFSFDSGMT VIHAEEFSKMGVEAVIRRAREVVGDGPTYVTFDVDSLDPAYAPGTGTPEVGGLSPREVLTLLRGLAGLNIVGGDVMEVAP QNDPSGNTALVGAQMLFEILCLVALSPAMANR
Specific function: Catalyzes The Formation Of Putrescine From Agmatine. [C]
COG id: COG0010
COG function: function code E; Arginase/agmatinase/formimionoglutamate hydrolase, arginase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the arginase family. Agmatinase subfamily [H]
Homologues:
Organism=Homo sapiens, GI37537722, Length=276, Percent_Identity=44.9275362318841, Blast_Score=244, Evalue=1e-64, Organism=Homo sapiens, GI10947139, Length=303, Percent_Identity=25.7425742574257, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI4502215, Length=297, Percent_Identity=25.2525252525253, Blast_Score=72, Evalue=8e-13, Organism=Escherichia coli, GI1789306, Length=265, Percent_Identity=39.622641509434, Blast_Score=175, Evalue=3e-45, Organism=Saccharomyces cerevisiae, GI6325146, Length=199, Percent_Identity=35.1758793969849, Blast_Score=83, Evalue=6e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005925 - InterPro: IPR006035 - InterPro: IPR020855 [H]
Pfam domain/function: PF00491 Arginase [H]
EC number: =3.5.3.7; =3.5.3.10 [H]
Molecular weight: Translated: 37530; Mature: 37399
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: PS00148 ARGINASE_2 ; PS01053 ARGINASE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTNAEHLARLRARYAGASGADMFDPAFKAVAEQIFSSSDRRKWPFADVPTFLDAPYRAD CCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCC GLAQPEPNLAGLDVALIGVPMDLGVTNRAGARLGPRAVRNVERIGPYEHALGLAPVTRLK CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCHHHHHH MADVGDVPMRSRFSLDECHADIEACFNQVVNAGVIPLAVGGDHSITGSILKAVGRDRPVG HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCE MVHIDAHCDTAGTYEGSKFHHGGPFREAVLAGVLDPRRCIQIGIRGGAEYLWEFSFDSGM EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCC TVIHAEEFSKMGVEAVIRRAREVVGDGPTYVTFDVDSLDPAYAPGTGTPEVGGLSPREVL EEEEHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH TLLRGLAGLNIVGGDVMEVAPQNDPSGNTALVGAQMLFEILCLVALSPAMANR HHHHHHHCCEEECCCCEEECCCCCCCCCEEHHHHHHHHHHHHHHHHCHHHCCC >Mature Secondary Structure TTNAEHLARLRARYAGASGADMFDPAFKAVAEQIFSSSDRRKWPFADVPTFLDAPYRAD CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCC GLAQPEPNLAGLDVALIGVPMDLGVTNRAGARLGPRAVRNVERIGPYEHALGLAPVTRLK CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCHHHHHH MADVGDVPMRSRFSLDECHADIEACFNQVVNAGVIPLAVGGDHSITGSILKAVGRDRPVG HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCE MVHIDAHCDTAGTYEGSKFHHGGPFREAVLAGVLDPRRCIQIGIRGGAEYLWEFSFDSGM EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCC TVIHAEEFSKMGVEAVIRRAREVVGDGPTYVTFDVDSLDPAYAPGTGTPEVGGLSPREVL EEEEHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH TLLRGLAGLNIVGGDVMEVAPQNDPSGNTALVGAQMLFEILCLVALSPAMANR HHHHHHHCCEEECCCCEEECCCCCCCCCEEHHHHHHHHHHHHHHHHCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA