| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787092
Identifier: 91787092
GI number: 91787092
Start: 1236456
End: 1237904
Strand: Reverse
Name: 91787092
Synonym: Bpro_1195
Alternate gene names: NA
Gene position: 1237904-1236456 (Counterclockwise)
Preceding gene: 91787093
Following gene: 91787091
Centisome position: 23.8
GC content: 69.57
Gene sequence:
>1449_bases ATGGGAGAAGCTGCCGCGCTGGTCAACAGCCTGTCCAGGGCATTGCAGGCGGAGCTGATCGAAACCCACATCTCATGGGT GCTGCTGGCCGGCGACACCGCCTACAAGATCAAGAAACCGGTGCGGCTGGCCTTTGTGGATTACGGCGACCTGGCGGCGC GGCGTCATTTCTGTGAAGAGGAAGTGCGGCTGAACCAGCGGCTGGCGCCGTCGCTGTACCTGGGGGTCACGCGTATCACC GGCGCGCCCGGGGCGCCCGTCCTGGACGGCTCCGGGCCCGTGCTGGAGTACGCGGTGCGCATGCGGCGCTTCGCGCCGGG TGCACTGTTCAGCGAGCAGCTCGCCTCGGACACGCTGCGTGCCGACGACATCGATCGGCTGGCCACCCTGCTCGCCGGGT TTCATGCGGGTGCGCCGCGGGTTGACGCAACGAGCGATTTCGCCAGCCCCGAACGGCGGCGCGCCAGCGCGCTGGCGGCA CTCGAAGGCGTGCGGCCGCTGGCGAGCGAGGACGTGTTCGCCGCGCTCCGGGCCTGGCTCGAAGCCGGAGCTGACGCGCT GACAGCCTTGTGGACCTCCCGCAAGGCGGAGGGCCGCGTACGCGAATGCCATGGCGACCTGCATCTGGCCAATGTGGTCA CGCACGATGGCGGCGTGGTGGCCTTTGACTGCATCGAGTTTGACCCGGCACTGCGCTGGGTTGATGTGCTCGACGACGTA ACCTTCGCCGTGATGGACCTCGACGCCCGCGGCCGCCGCGACCTCGCCTTTCGCCTGCTTAACGGCTGGCTCGACCGCAC CGGCGACCATGGCGGCCTGCCCGCGCTGCGGTTTTCGCTCGTCTATCGCGCGCTGGTGCGGGCGCAGGTGGAACACCTGC GCCGGGCCAACAGCACCGAGGCGCAACGCTACCTGCAGGCGGCCGTTGGCTGGACACGGCCGGGTGACGTGCGGCTATTC ATCACCCATGGCCTGCCGGGTTCCGGGAAAACCTTCGCATCACAGCAGTTGCTGGAGCAGCAGGGAGCGATCCGGCTGCG CTCGGACGTAGAGCGCAAGCGCCTGTTCGGGCTCGGCATGCTCGATGATTCGCGCGCGCAGGGACTGAACCTGTACGACG CCGACGCCACCGCGCGCACTTACAAACATCTGTTCGAGACGGCGCGCACCGCGCTGCAGGCAGGCTACCCAGTGATCCTC GATGCGGCGTTCCTGCGCCGTGCGGAACGGGCCCAGGCCCTGGCGCTGGCGCGTTCGCTCAGCGTGCCCTTCGCCATCAT CGATTGCAAGGCGGCGCTGCCGGTGCTGCGCGCGCGCCTGCTGGGCCGCCGGGGGGACCCGTCCGAGGCAGACACCGCCG TGCTGGAGCGCCTGCGCGCGGTTGCCGAACCGCTCGCCAGCGACGAGCTTGCCTTTGTCCAGGCCATGCCCGGGGACGGG GTCCCGTGA
Upstream 100 bases:
>100_bases ATTTGCATTTTCTTCCCCGTCGCACGCTGCGAGAGAGCTTCCCGTGAACGCCGCGCCCGGTCTGGAAGCTGACGGCACCC CGCCTGAGGGCGGCAGGCCC
Downstream 100 bases:
>100_bases TCATTTTGCTGCCCTGCTCCGTCTCGTCCCGCCCGGCCACCGGAACCGGCGCCCCGCGTTGAGCTTTGTCAAGGCCGCGC GCACCTGCCTTGCCTACAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 482; Mature: 481
Protein sequence:
>482_residues MGEAAALVNSLSRALQAELIETHISWVLLAGDTAYKIKKPVRLAFVDYGDLAARRHFCEEEVRLNQRLAPSLYLGVTRIT GAPGAPVLDGSGPVLEYAVRMRRFAPGALFSEQLASDTLRADDIDRLATLLAGFHAGAPRVDATSDFASPERRRASALAA LEGVRPLASEDVFAALRAWLEAGADALTALWTSRKAEGRVRECHGDLHLANVVTHDGGVVAFDCIEFDPALRWVDVLDDV TFAVMDLDARGRRDLAFRLLNGWLDRTGDHGGLPALRFSLVYRALVRAQVEHLRRANSTEAQRYLQAAVGWTRPGDVRLF ITHGLPGSGKTFASQQLLEQQGAIRLRSDVERKRLFGLGMLDDSRAQGLNLYDADATARTYKHLFETARTALQAGYPVIL DAAFLRRAERAQALALARSLSVPFAIIDCKAALPVLRARLLGRRGDPSEADTAVLERLRAVAEPLASDELAFVQAMPGDG VP
Sequences:
>Translated_482_residues MGEAAALVNSLSRALQAELIETHISWVLLAGDTAYKIKKPVRLAFVDYGDLAARRHFCEEEVRLNQRLAPSLYLGVTRIT GAPGAPVLDGSGPVLEYAVRMRRFAPGALFSEQLASDTLRADDIDRLATLLAGFHAGAPRVDATSDFASPERRRASALAA LEGVRPLASEDVFAALRAWLEAGADALTALWTSRKAEGRVRECHGDLHLANVVTHDGGVVAFDCIEFDPALRWVDVLDDV TFAVMDLDARGRRDLAFRLLNGWLDRTGDHGGLPALRFSLVYRALVRAQVEHLRRANSTEAQRYLQAAVGWTRPGDVRLF ITHGLPGSGKTFASQQLLEQQGAIRLRSDVERKRLFGLGMLDDSRAQGLNLYDADATARTYKHLFETARTALQAGYPVIL DAAFLRRAERAQALALARSLSVPFAIIDCKAALPVLRARLLGRRGDPSEADTAVLERLRAVAEPLASDELAFVQAMPGDG VP >Mature_481_residues GEAAALVNSLSRALQAELIETHISWVLLAGDTAYKIKKPVRLAFVDYGDLAARRHFCEEEVRLNQRLAPSLYLGVTRITG APGAPVLDGSGPVLEYAVRMRRFAPGALFSEQLASDTLRADDIDRLATLLAGFHAGAPRVDATSDFASPERRRASALAAL EGVRPLASEDVFAALRAWLEAGADALTALWTSRKAEGRVRECHGDLHLANVVTHDGGVVAFDCIEFDPALRWVDVLDDVT FAVMDLDARGRRDLAFRLLNGWLDRTGDHGGLPALRFSLVYRALVRAQVEHLRRANSTEAQRYLQAAVGWTRPGDVRLFI THGLPGSGKTFASQQLLEQQGAIRLRSDVERKRLFGLGMLDDSRAQGLNLYDADATARTYKHLFETARTALQAGYPVILD AAFLRRAERAQALALARSLSVPFAIIDCKAALPVLRARLLGRRGDPSEADTAVLERLRAVAEPLASDELAFVQAMPGDGV P
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 52543; Mature: 52411
Theoretical pI: Translated: 7.33; Mature: 7.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGEAAALVNSLSRALQAELIETHISWVLLAGDTAYKIKKPVRLAFVDYGDLAARRHFCEE CCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHCCCEEEEEECCHHHHHHHHHHHH EVRLNQRLAPSLYLGVTRITGAPGAPVLDGSGPVLEYAVRMRRFAPGALFSEQLASDTLR HHHHHHHCCCHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCC ADDIDRLATLLAGFHAGAPRVDATSDFASPERRRASALAALEGVRPLASEDVFAALRAWL CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH EAGADALTALWTSRKAEGRVRECHGDLHLANVVTHDGGVVAFDCIEFDPALRWVDVLDDV HHCHHHHHHHHHCCCCCCCHHHHCCCEEEEHEEECCCCEEEEEEEECCHHHHHHHHHHHH TFAVMDLDARGRRDLAFRLLNGWLDRTGDHGGLPALRFSLVYRALVRAQVEHLRRANSTE HHHEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH AQRYLQAAVGWTRPGDVRLFITHGLPGSGKTFASQQLLEQQGAIRLRSDVERKRLFGLGM HHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC LDDSRAQGLNLYDADATARTYKHLFETARTALQAGYPVILDAAFLRRAERAQALALARSL CCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC SVPFAIIDCKAALPVLRARLLGRRGDPSEADTAVLERLRAVAEPLASDELAFVQAMPGDG CCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC VP CC >Mature Secondary Structure GEAAALVNSLSRALQAELIETHISWVLLAGDTAYKIKKPVRLAFVDYGDLAARRHFCEE CHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHCCCEEEEEECCHHHHHHHHHHHH EVRLNQRLAPSLYLGVTRITGAPGAPVLDGSGPVLEYAVRMRRFAPGALFSEQLASDTLR HHHHHHHCCCHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCC ADDIDRLATLLAGFHAGAPRVDATSDFASPERRRASALAALEGVRPLASEDVFAALRAWL CCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH EAGADALTALWTSRKAEGRVRECHGDLHLANVVTHDGGVVAFDCIEFDPALRWVDVLDDV HHCHHHHHHHHHCCCCCCCHHHHCCCEEEEHEEECCCCEEEEEEEECCHHHHHHHHHHHH TFAVMDLDARGRRDLAFRLLNGWLDRTGDHGGLPALRFSLVYRALVRAQVEHLRRANSTE HHHEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH AQRYLQAAVGWTRPGDVRLFITHGLPGSGKTFASQQLLEQQGAIRLRSDVERKRLFGLGM HHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC LDDSRAQGLNLYDADATARTYKHLFETARTALQAGYPVILDAAFLRRAERAQALALARSL CCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC SVPFAIIDCKAALPVLRARLLGRRGDPSEADTAVLERLRAVAEPLASDELAFVQAMPGDG CCCEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC VP CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]