Click here to switch to the map view.

The map label for this gene is xerD [C]

Identifier: 91786615

GI number: 91786615

Start: 724818

End: 725753

Strand: Direct

Name: xerD [C]

Synonym: Bpro_0712

Alternate gene names: 91786615

Gene position: 724818-725753 (Clockwise)

Preceding gene: 91786614

Following gene: 91786616

Centisome position: 13.94

GC content: 62.93

Gene sequence:

>936_bases
ATGAAGATCGAGCAAGCCGTCGCGACCTACGTGGGCTACAAGCAATCTCTGGGGATGCGCTTCGCGACCCAGGCGCGCAT
GCTGAAGTCATTCAGCAAGAGTCTGGGAAGCATCGAAGTCGACCGGATCGGGCCGGAGTCGGTGCGTGCCTTCCTCGATG
GCAACGGGCCGATGACGCGGTACTGGCATTGCAAGTTCGGCACCCTTGCCGGCTTCTATCGCTTCTGCCTCGCCCGCGGG
TACGTCTCCAGCGTGCCGCTGCCCACCACAGAGCCGAGGTGTCCCCAGACGTTTACGCCCTACATTTACTCGGAGGATGA
GATCAAGCGGCTCCTGCAGGCCGCCGCTGGTCGTGCTTTCTGCAAAATCGATGCGCACACCAGCCGAACCCAGCTCTTGT
TGCTCTACGCAACGGGACTGCGTATCAGTGAAGCGCTGAATCTGAACCTGGCCGACGTCGACCTGAACGACCGTGTCCTC
TACGTGCGCAGGTCCAAGTTCTACAAGACACGACTCGTGCCCATAGGCACCGACCTGACACAGGTCTTGCGCGAGTACGC
GCGGCGACGTTACAAGCGTTCGCCGCTGGATCCCGACGCGCCGTTCTTGCTGACATCTCGAGGTGAGCGCGTCTCGCGGG
CGGGCGCCGAGCAAGCCTTCCGTCAGATGCGATCGCAAGCCAAGGTCCGTCGCCACGACGGTGGTCGCTACCAGCCGCGG
TTGCATGACCTACGCCATACCGCGGCCGTGACGCGTCTTGTGCGCTGGTATCGCGAAGGCGTCGACGTGCAGCGCTTGCT
GCCGCAGTTGGCGACGTATCTGGGTCACGTGCACATCAGCGGCACGCAGTGCTATCTGAGCATGACGCCCGAGTTGCTGC
AGCAGGCCAGCGCGCGCTTCGAGCAATTCGCTCTCGGGGAGACCAGCCATGCGTGA

Upstream 100 bases:

>100_bases
ATCATCTCGGCCACCGCAGTGCCTCCGCCACGCGCACCTACGCCAAGGTGGATCTCGTTGGCCTGCGTCAGGTTGCCGAC
TTCAGTCTGGGGGGACTGCT

Downstream 100 bases:

>100_bases
CACCAGCACCCTTGGACCGTGGATTCGCCGATTCCTCCTGGAGCACCTGGTCAGTGAGCGCAATCTGGCGGCGAACACGC
GGCGCAGCTACCGAGACACG

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MKIEQAVATYVGYKQSLGMRFATQARMLKSFSKSLGSIEVDRIGPESVRAFLDGNGPMTRYWHCKFGTLAGFYRFCLARG
YVSSVPLPTTEPRCPQTFTPYIYSEDEIKRLLQAAAGRAFCKIDAHTSRTQLLLLYATGLRISEALNLNLADVDLNDRVL
YVRRSKFYKTRLVPIGTDLTQVLREYARRRYKRSPLDPDAPFLLTSRGERVSRAGAEQAFRQMRSQAKVRRHDGGRYQPR
LHDLRHTAAVTRLVRWYREGVDVQRLLPQLATYLGHVHISGTQCYLSMTPELLQQASARFEQFALGETSHA

Sequences:

>Translated_311_residues
MKIEQAVATYVGYKQSLGMRFATQARMLKSFSKSLGSIEVDRIGPESVRAFLDGNGPMTRYWHCKFGTLAGFYRFCLARG
YVSSVPLPTTEPRCPQTFTPYIYSEDEIKRLLQAAAGRAFCKIDAHTSRTQLLLLYATGLRISEALNLNLADVDLNDRVL
YVRRSKFYKTRLVPIGTDLTQVLREYARRRYKRSPLDPDAPFLLTSRGERVSRAGAEQAFRQMRSQAKVRRHDGGRYQPR
LHDLRHTAAVTRLVRWYREGVDVQRLLPQLATYLGHVHISGTQCYLSMTPELLQQASARFEQFALGETSHA
>Mature_311_residues
MKIEQAVATYVGYKQSLGMRFATQARMLKSFSKSLGSIEVDRIGPESVRAFLDGNGPMTRYWHCKFGTLAGFYRFCLARG
YVSSVPLPTTEPRCPQTFTPYIYSEDEIKRLLQAAAGRAFCKIDAHTSRTQLLLLYATGLRISEALNLNLADVDLNDRVL
YVRRSKFYKTRLVPIGTDLTQVLREYARRRYKRSPLDPDAPFLLTSRGERVSRAGAEQAFRQMRSQAKVRRHDGGRYQPR
LHDLRHTAAVTRLVRWYREGVDVQRLLPQLATYLGHVHISGTQCYLSMTPELLQQASARFEQFALGETSHA

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35518; Mature: 35518

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIEQAVATYVGYKQSLGMRFATQARMLKSFSKSLGSIEVDRIGPESVRAFLDGNGPMTR
CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHCCCCCCCCE
YWHCKFGTLAGFYRFCLARGYVSSVPLPTTEPRCPQTFTPYIYSEDEIKRLLQAAAGRAF
EEEECHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCEE
CKIDAHTSRTQLLLLYATGLRISEALNLNLADVDLNDRVLYVRRSKFYKTRLVPIGTDLT
EEEECCCCCCEEEEEEECCCHHHHHHCCEEEEECCCCCEEEEECCCHHHEEEEECCCHHH
QVLREYARRRYKRSPLDPDAPFLLTSRGERVSRAGAEQAFRQMRSQAKVRRHDGGRYQPR
HHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
LHDLRHTAAVTRLVRWYREGVDVQRLLPQLATYLGHVHISGTQCYLSMTPELLQQASARF
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEECCCEEEEECCHHHHHHHHHHH
EQFALGETSHA
HHHHCCCCCCC
>Mature Secondary Structure
MKIEQAVATYVGYKQSLGMRFATQARMLKSFSKSLGSIEVDRIGPESVRAFLDGNGPMTR
CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHCCCCCCCCE
YWHCKFGTLAGFYRFCLARGYVSSVPLPTTEPRCPQTFTPYIYSEDEIKRLLQAAAGRAF
EEEECHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCEE
CKIDAHTSRTQLLLLYATGLRISEALNLNLADVDLNDRVLYVRRSKFYKTRLVPIGTDLT
EEEECCCCCCEEEEEEECCCHHHHHHCCEEEEECCCCCEEEEECCCHHHEEEEECCCHHH
QVLREYARRRYKRSPLDPDAPFLLTSRGERVSRAGAEQAFRQMRSQAKVRRHDGGRYQPR
HHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
LHDLRHTAAVTRLVRWYREGVDVQRLLPQLATYLGHVHISGTQCYLSMTPELLQQASARF
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEECCCEEEEECCHHHHHHHHHHH
EQFALGETSHA
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]