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The map label for this gene is xerD [C]

Identifier: 91786614

GI number: 91786614

Start: 723577

End: 724821

Strand: Direct

Name: xerD [C]

Synonym: Bpro_0711

Alternate gene names: 91786614

Gene position: 723577-724821 (Clockwise)

Preceding gene: 91786613

Following gene: 91786615

Centisome position: 13.91

GC content: 64.42

Gene sequence:

>1245_bases
ATGTTCGAGAATCTGTATCGGTATTCGCGCGTCCTGGCCCGGCATCTCGATGGACCGGCGGCCGAGGAGCGAGACCGCTT
TGTCGCGCACTTCGCAGCGTCGGGGGCCACGAGAGATTCGGTTTCAAACCTGGCGAGTGAGCTCCTGGTCGTCGCGCAGC
GCCTGGACGTCAGCGGTACGCGGGCCGTCACGCCCGAGGAGGTCGCCTCGGTCGCCGATCGTTGGGTCCGGCATCACCGA
CGACGCGGCCGCCGCATCTCACCCGATCGGCGTCAGAGATTCGTGCAAGTAGCCACCGACTGGCTGCGATTCATGGGGCG
CCTGCAGTTGCCGCCTGCGAAGCCCGGGGCCGGCACTGATCTCATTGACGAGTTTGCCAGGCACATGCAGCGAGAGCGTG
GCTTGTCCCCGATCACCATCAACAACCGCTGCTGGCATGTTCGAGCATTCCTGACCTGGCTCGCCGAGCAACACCGTGGC
GCCGAAGACGCCACCTTGCACCAAGTGGATGCCTTCTTGTCGATGAGAGGCGTGCAGGGTTGGTGCCGGGCGTCCATCGC
GACGGCTGCCACTGCCCTGCGATCCTTCTATGCCCACATGACCGCGACGGGTCGTTGCGCAGAAGGCTTCGTCGCCGGGA
TCGAGGGGCCACCCCTGTTCAAGCAGGAAGCGCTGGCTGTCGGTCCATGCTGGGATGACGTTCAGCGGTTGATCGCCAGC
ACCGACACGGATCAACCCCGGGACATCCGCGACCGAGTCATTCTGATGCTACTTGCGATCTATGGCCTGCGGCGAGGCGA
GGTGGTTGCGCTGACTCTGGACGACATCGACTGGGAGCGTGACATCCTTCACGTCGCACGTCCCAAGCAGCGTTGCAAGC
ACGACTACCCGCTGACCACCGAGGTCGGCAATGCGATCCTTCGCTATGTGCGTGAGGTGCGACCGCGCTGCGCCTCGCGC
AGGCTGTTCTTGACGCTCAAGGCACCGCTGGTGCCGCTGGCGCCAAATGGCTTGCATCACGCTGTGGCGTCGCGCCTGGA
GGCACTGGGTATCCGCTGTCCCCGAACGGGACCTCATGCGTTGCGCCATGCCTGCGCAACTCATCTTGTGGCCGAAGGCC
TGTCTCTCAAGCAGATTGGCGATCATCTCGGCCACCGCAGTGCCTCCGCCACGCGCACCTACGCCAAGGTGGATCTCGTT
GGCCTGCGTCAGGTTGCCGACTTCAGTCTGGGGGGACTGCTATGA

Upstream 100 bases:

>100_bases
GGCCGGCGGCGGCGTCCTCGGGAGGCCCGTCGCTGAGCACCACATAAATTTCATCGGCGGCGTAGAGTCGGGTCCCTTCA
TTTCATAAGGGGATCCGATC

Downstream 100 bases:

>100_bases
AGATCGAGCAAGCCGTCGCGACCTACGTGGGCTACAAGCAATCTCTGGGGATGCGCTTCGCGACCCAGGCGCGCATGCTG
AAGTCATTCAGCAAGAGTCT

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MFENLYRYSRVLARHLDGPAAEERDRFVAHFAASGATRDSVSNLASELLVVAQRLDVSGTRAVTPEEVASVADRWVRHHR
RRGRRISPDRRQRFVQVATDWLRFMGRLQLPPAKPGAGTDLIDEFARHMQRERGLSPITINNRCWHVRAFLTWLAEQHRG
AEDATLHQVDAFLSMRGVQGWCRASIATAATALRSFYAHMTATGRCAEGFVAGIEGPPLFKQEALAVGPCWDDVQRLIAS
TDTDQPRDIRDRVILMLLAIYGLRRGEVVALTLDDIDWERDILHVARPKQRCKHDYPLTTEVGNAILRYVREVRPRCASR
RLFLTLKAPLVPLAPNGLHHAVASRLEALGIRCPRTGPHALRHACATHLVAEGLSLKQIGDHLGHRSASATRTYAKVDLV
GLRQVADFSLGGLL

Sequences:

>Translated_414_residues
MFENLYRYSRVLARHLDGPAAEERDRFVAHFAASGATRDSVSNLASELLVVAQRLDVSGTRAVTPEEVASVADRWVRHHR
RRGRRISPDRRQRFVQVATDWLRFMGRLQLPPAKPGAGTDLIDEFARHMQRERGLSPITINNRCWHVRAFLTWLAEQHRG
AEDATLHQVDAFLSMRGVQGWCRASIATAATALRSFYAHMTATGRCAEGFVAGIEGPPLFKQEALAVGPCWDDVQRLIAS
TDTDQPRDIRDRVILMLLAIYGLRRGEVVALTLDDIDWERDILHVARPKQRCKHDYPLTTEVGNAILRYVREVRPRCASR
RLFLTLKAPLVPLAPNGLHHAVASRLEALGIRCPRTGPHALRHACATHLVAEGLSLKQIGDHLGHRSASATRTYAKVDLV
GLRQVADFSLGGLL
>Mature_414_residues
MFENLYRYSRVLARHLDGPAAEERDRFVAHFAASGATRDSVSNLASELLVVAQRLDVSGTRAVTPEEVASVADRWVRHHR
RRGRRISPDRRQRFVQVATDWLRFMGRLQLPPAKPGAGTDLIDEFARHMQRERGLSPITINNRCWHVRAFLTWLAEQHRG
AEDATLHQVDAFLSMRGVQGWCRASIATAATALRSFYAHMTATGRCAEGFVAGIEGPPLFKQEALAVGPCWDDVQRLIAS
TDTDQPRDIRDRVILMLLAIYGLRRGEVVALTLDDIDWERDILHVARPKQRCKHDYPLTTEVGNAILRYVREVRPRCASR
RLFLTLKAPLVPLAPNGLHHAVASRLEALGIRCPRTGPHALRHACATHLVAEGLSLKQIGDHLGHRSASATRTYAKVDLV
GLRQVADFSLGGLL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=290, Percent_Identity=27.9310344827586, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1790767, Length=166, Percent_Identity=26.5060240963855, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46322; Mature: 46322

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS00018 EF_HAND_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFENLYRYSRVLARHLDGPAAEERDRFVAHFAASGATRDSVSNLASELLVVAQRLDVSGT
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
RAVTPEEVASVADRWVRHHRRRGRRISPDRRQRFVQVATDWLRFMGRLQLPPAKPGAGTD
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
LIDEFARHMQRERGLSPITINNRCWHVRAFLTWLAEQHRGAEDATLHQVDAFLSMRGVQG
HHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH
WCRASIATAATALRSFYAHMTATGRCAEGFVAGIEGPPLFKQEALAVGPCWDDVQRLIAS
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHCCCCCCCCHHHHHHHHHC
TDTDQPRDIRDRVILMLLAIYGLRRGEVVALTLDDIDWERDILHVARPKQRCKHDYPLTT
CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHCCCHHHCCCCCCCHH
EVGNAILRYVREVRPRCASRRLFLTLKAPLVPLAPNGLHHAVASRLEALGIRCPRTGPHA
HHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHH
LRHACATHLVAEGLSLKQIGDHLGHRSASATRTYAKVDLVGLRQVADFSLGGLL
HHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFENLYRYSRVLARHLDGPAAEERDRFVAHFAASGATRDSVSNLASELLVVAQRLDVSGT
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
RAVTPEEVASVADRWVRHHRRRGRRISPDRRQRFVQVATDWLRFMGRLQLPPAKPGAGTD
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
LIDEFARHMQRERGLSPITINNRCWHVRAFLTWLAEQHRGAEDATLHQVDAFLSMRGVQG
HHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH
WCRASIATAATALRSFYAHMTATGRCAEGFVAGIEGPPLFKQEALAVGPCWDDVQRLIAS
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHCCCCCCCCHHHHHHHHHC
TDTDQPRDIRDRVILMLLAIYGLRRGEVVALTLDDIDWERDILHVARPKQRCKHDYPLTT
CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHCCCHHHCCCCCCCHH
EVGNAILRYVREVRPRCASRRLFLTLKAPLVPLAPNGLHHAVASRLEALGIRCPRTGPHA
HHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHH
LRHACATHLVAEGLSLKQIGDHLGHRSASATRTYAKVDLVGLRQVADFSLGGLL
HHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]