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The map label for this gene is xerD [C]

Identifier: 91786616

GI number: 91786616

Start: 725746

End: 726741

Strand: Direct

Name: xerD [C]

Synonym: Bpro_0713

Alternate gene names: 91786616

Gene position: 725746-726741 (Clockwise)

Preceding gene: 91786615

Following gene: 91786618

Centisome position: 13.96

GC content: 64.46

Gene sequence:

>996_bases
ATGCGTGACACCAGCACCCTTGGACCGTGGATTCGCCGATTCCTCCTGGAGCACCTGGTCAGTGAGCGCAATCTGGCGGC
GAACACGCGGCGCAGCTACCGAGACACGATGTGCCAGTTGCTCCCCTTCGTGTCGGGGCGCCTGCACAAGGCCGTGGACC
GACTGGCGGTGGTCGATGTGTCGCCGCAGTTGGTGCGGGAGTTCCTCAGTGACGTCGAGACTCACCGCGGCTGTGGCATC
GCCACGCGCAATCAGCGCCTGGCGGCCATTCACGCCTTGGCCCGATTCGTCGGTGAACATAGCCCCGAACACATCGCCTG
GTGTGCACAGGTCCGCTGCGTGCCCTACAAGAAAGGGACTCAAGCGTCAGTGCCATACCTCGACAAGGCGGAAATCGACG
CGCTGCTGGCCTGTCCGAACCGGCGAACGGAGCAAGGCGGTCGGGACTACGCGCTGCTCCTATTCCTCTACAACACGGGC
GCGCGCGCCAGCGAGGCTTCGGAGCTGATCGTCGGCGACCTGCATCTTGATCAGGCGAGCGTCGACATTCTCGGCAAGGG
GCGTAAACGCCGCCAATGCCCCCTGTGGCCAGCGACGGTGCGCGAGTTGCGCGCCCTCGTGGGCGAACGTTCCCGGCACG
AGCACGTCTTTCTCAACCGGTGTGGCCAGCCGACGACGCGCTTCGGCGTCCACGCACTGGTCGAGCGCACCGCCGCGAGA
GCCAAGGACTTCATGCCATCGCTCGCGATGAAGAGAGTCAGCCCGCACTCCATTCGCCACTCCACGGCCTCGCATCTGCT
CAGTGCGGGCGTCGACATCAACACCGTGCGAGCCTGGCTTGGACATGCATCGCTCGACACGACCAATGTCTACGCCGAAA
TCGACCTCGAGGGCAAGGCGCGAGCGCTGGCGAAGTGCGAGATCTCCGCGGCCCAGAAGTCAGGCAAGAGGTGGCATTCC
CAACCGCACATCATGGAGTTCCTAAGATCGCTGTGA

Upstream 100 bases:

>100_bases
GTGCACATCAGCGGCACGCAGTGCTATCTGAGCATGACGCCCGAGTTGCTGCAGCAGGCCAGCGCGCGCTTCGAGCAATT
CGCTCTCGGGGAGACCAGCC

Downstream 100 bases:

>100_bases
CCGGAATTTATGTGCCACTCAGCGACGGTCCTCCCGAGGGCGACGCCGCCGGCCGCCACATATGGACCAACGCCACATTA
GGCATGAGATGTGGTCGACC

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MRDTSTLGPWIRRFLLEHLVSERNLAANTRRSYRDTMCQLLPFVSGRLHKAVDRLAVVDVSPQLVREFLSDVETHRGCGI
ATRNQRLAAIHALARFVGEHSPEHIAWCAQVRCVPYKKGTQASVPYLDKAEIDALLACPNRRTEQGGRDYALLLFLYNTG
ARASEASELIVGDLHLDQASVDILGKGRKRRQCPLWPATVRELRALVGERSRHEHVFLNRCGQPTTRFGVHALVERTAAR
AKDFMPSLAMKRVSPHSIRHSTASHLLSAGVDINTVRAWLGHASLDTTNVYAEIDLEGKARALAKCEISAAQKSGKRWHS
QPHIMEFLRSL

Sequences:

>Translated_331_residues
MRDTSTLGPWIRRFLLEHLVSERNLAANTRRSYRDTMCQLLPFVSGRLHKAVDRLAVVDVSPQLVREFLSDVETHRGCGI
ATRNQRLAAIHALARFVGEHSPEHIAWCAQVRCVPYKKGTQASVPYLDKAEIDALLACPNRRTEQGGRDYALLLFLYNTG
ARASEASELIVGDLHLDQASVDILGKGRKRRQCPLWPATVRELRALVGERSRHEHVFLNRCGQPTTRFGVHALVERTAAR
AKDFMPSLAMKRVSPHSIRHSTASHLLSAGVDINTVRAWLGHASLDTTNVYAEIDLEGKARALAKCEISAAQKSGKRWHS
QPHIMEFLRSL
>Mature_331_residues
MRDTSTLGPWIRRFLLEHLVSERNLAANTRRSYRDTMCQLLPFVSGRLHKAVDRLAVVDVSPQLVREFLSDVETHRGCGI
ATRNQRLAAIHALARFVGEHSPEHIAWCAQVRCVPYKKGTQASVPYLDKAEIDALLACPNRRTEQGGRDYALLLFLYNTG
ARASEASELIVGDLHLDQASVDILGKGRKRRQCPLWPATVRELRALVGERSRHEHVFLNRCGQPTTRFGVHALVERTAAR
AKDFMPSLAMKRVSPHSIRHSTASHLLSAGVDINTVRAWLGHASLDTTNVYAEIDLEGKARALAKCEISAAQKSGKRWHS
QPHIMEFLRSL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=308, Percent_Identity=28.2467532467532, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790244, Length=294, Percent_Identity=26.8707482993197, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37098; Mature: 37098

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDTSTLGPWIRRFLLEHLVSERNLAANTRRSYRDTMCQLLPFVSGRLHKAVDRLAVVDV
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
SPQLVREFLSDVETHRGCGIATRNQRLAAIHALARFVGEHSPEHIAWCAQVRCVPYKKGT
CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHEEECCCCCC
QASVPYLDKAEIDALLACPNRRTEQGGRDYALLLFLYNTGARASEASELIVGDLHLDQAS
CCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCHH
VDILGKGRKRRQCPLWPATVRELRALVGERSRHEHVFLNRCGQPTTRFGVHALVERTAAR
HHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH
AKDFMPSLAMKRVSPHSIRHSTASHLLSAGVDINTVRAWLGHASLDTTNVYAEIDLEGKA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCH
RALAKCEISAAQKSGKRWHSQPHIMEFLRSL
HHHHHHHHHHHHHCCHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MRDTSTLGPWIRRFLLEHLVSERNLAANTRRSYRDTMCQLLPFVSGRLHKAVDRLAVVDV
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
SPQLVREFLSDVETHRGCGIATRNQRLAAIHALARFVGEHSPEHIAWCAQVRCVPYKKGT
CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHEEECCCCCC
QASVPYLDKAEIDALLACPNRRTEQGGRDYALLLFLYNTGARASEASELIVGDLHLDQAS
CCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEECCCHH
VDILGKGRKRRQCPLWPATVRELRALVGERSRHEHVFLNRCGQPTTRFGVHALVERTAAR
HHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH
AKDFMPSLAMKRVSPHSIRHSTASHLLSAGVDINTVRAWLGHASLDTTNVYAEIDLEGKA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCH
RALAKCEISAAQKSGKRWHSQPHIMEFLRSL
HHHHHHHHHHHHHCCHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]