| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is slt [H]
Identifier: 91786557
GI number: 91786557
Start: 661450
End: 663573
Strand: Reverse
Name: slt [H]
Synonym: Bpro_0652
Alternate gene names: 91786557
Gene position: 663573-661450 (Counterclockwise)
Preceding gene: 91786560
Following gene: 91786552
Centisome position: 12.76
GC content: 66.38
Gene sequence:
>2124_bases ATGCTATACAAAAAAAATTTCAACGCCGCGTTCTTTGCTGCGGCGTATGCCACCCTCTCGCTCAGTTTGCTGGTCCCCGC CGCCGCCCAAAACACCTCCTCAAACGGCAACGGCAGCAATGGCGACAACCTGATTCTCGAAATGAACAAGGCCTTCAGGC GCAGCGACAAGGGCCGGCTGGCCCAGATGCTGCCCCAGGCCAGAGGCCATGCGCTGGAGCCCTGGGCGGCCTACTGGGAG CTGAAAACGCGTCTGGGCGAGGCCAGCGCGCAGGAGGTGCAGGACTTTCTCGCCCGCTACGCCGGCACCTACCAGGAAGA CCGCCTGCGCAATGACTGGCTGCTGCTGCTGGGCCAGCGCCGCGACTGGGCCGCCTTTGCGGCCGAGTACCCGAACTACC GCATGAACGACGACAGGGAAGTGCGTTGCTATGCCCTGCTGGTGGAGCACCTGAAGAATCCGGCGCTCGATGCGCGCCTG TCGGACGAAGTGCGAAAAAACTGGTACGCGCAGCGCGACGCCGACGACGGCTGCACCGCCGCCGCCGACCGGCTGGTCGG CGCCCAAAACCTCACGACGCAGGATGTCTGGCAAAAAGCCCGCATCGCCACCGAGGCCAACCGGCCACGGGCCGCAGCGG GTGCGGTGCAGATCATTGCTCCGGAGGCCATGGACCTGCTGACCGAGCTGAACAGCAGCCCCATCAGGTTTCTTGCCGGC AAACACTTGGCCCTGCGGAAAGTGCGCAAGGAAATCATCACGCTGGCACTGATCAAGATGGCCACCACCGACGTGGAAGG TGCCGCTTTCCAGCTGGAAAGCAAGTGGGCCGTCCAGCTCAACGCCGAGGAGCGCAACTGGGTCTGGGGCGTGATCGGCA AACAGGCGGCAACCCGCCTGGGCACGGTGCCGGGCAGCGATGCGCTGCAGTACTTTGCCAGGGTCAACAACGACAGCGAC CTGACGGATGACATGCTGGCCTGGAAGGCCCGTGCAGCGCTGCGCGCGGGCACCCAGGCCCAATGGCCGCAGGTGCTGGC GGCCATCAACGCAATGAGCGAGGAGGCCCGCAAGGACCCGGCCTGGAGCTACTGGAAGGCGCGCGCGCTGCTGGCCACGG CGCCGCCCAACATTCCCACCGCGGTCAGCACGCCACAGGGTGTCACGCAGACCATCAGCATCGCGCCCCAGCGCGCCGAG GCGCTGGCGATGCTGCAGGCTCTGGCCTCCCCGCGCGGCTTTTATGAGCAGCTGGCACTGGAGGAACTGGGCCAGAAGAT CACGGTGCCGGCCCAGCCGGCGCCACTCACGGCGGCAGAAAAGGAAGCCGCACGGCTCAACCCCGGGCTGAACCGCGCCG CCTATGCCATCACGATAGGTTTGCGGCCGGAGGGCGTGCGCGAATGGAACTACAGCACCAACCTGCACAAGCGCAACGGC GAGGGCGAACGCGCCGGGATGGGCGACCGCGAACTGCTGGCAGCCGCCCAGTTTGCCTGTGACCGGCAGATCTGGGACCG CTGCATCAACACCAGCGAGCGCACCAGAACCGAGACCGATTTCGATCAGCGCTTCCCCGTGCCGTTCCGCGAGGCCGTGG TCAAGCGCAGCCGCGAAGTCGGCCTCGACCCGGCCTACGTTTATGGGCTGATCCGCCAGGAAAGCCGTTTCATCATGGAT GCCCGTTCCGGCCCGGGGGCCTCGGGCCTGATGCAGATCATGCCCGCCACGGCGCGCGAAACCGCACGCCGAATCGGCCT GGCGGGTTTCACGCCCGACCAGATCAATGACCGCGACACCAACATCACGATAGGCACCGGCTACCTGAAGCTCGCCCTGG ACGCCTTCGAGGGCTCGATGGCCATGGCTGCAGCCGCCTACAACGCCGGGCCGGGCCGGCCCCGCGTCTGGCGCGGGCAA CCCGGCAGCCCGGTGCTCGATGCCGCCATCTGGGCCGAGAATGTGCCCTTCGGCGAGACCCGCGACTATGTCAAGAAAGT GCTTTCAAACACCACCAACTACGCGGCCATCCTGACGGGGCAGCCACAGTCCCTGAAAGCGCGGCTGGGCATGGTCGGGC CACGCGATGCGTCGCTGCCCGAGGTGAACAAGGATTTGCCCTGA
Upstream 100 bases:
>100_bases TCACCCGCTGCAGCAAATCGGCTCGCTGCAGGCGGTCGGGCATATCGAGGCGGGCTTGCACCAGTGCTTTTCGTGTGCTT AATTTGTCCATAATGTCCCG
Downstream 100 bases:
>100_bases TCAGAAAGTAGCTAGTGTGGTGCGCCACTCTATTCTGTACTTATATGATGGCGAGGCCCGTGGGCCTCGTCGCTGATCAG CCGGCGCTCCCGGAATGACA
Product: lytic transglycosylase catalytic subunit
Products: 1,6-Anhydrobond [C]
Alternate protein names: Exomuramidase; Peptidoglycan lytic exotransglycosylase; Slt70 [H]
Number of amino acids: Translated: 707; Mature: 707
Protein sequence:
>707_residues MLYKKNFNAAFFAAAYATLSLSLLVPAAAQNTSSNGNGSNGDNLILEMNKAFRRSDKGRLAQMLPQARGHALEPWAAYWE LKTRLGEASAQEVQDFLARYAGTYQEDRLRNDWLLLLGQRRDWAAFAAEYPNYRMNDDREVRCYALLVEHLKNPALDARL SDEVRKNWYAQRDADDGCTAAADRLVGAQNLTTQDVWQKARIATEANRPRAAAGAVQIIAPEAMDLLTELNSSPIRFLAG KHLALRKVRKEIITLALIKMATTDVEGAAFQLESKWAVQLNAEERNWVWGVIGKQAATRLGTVPGSDALQYFARVNNDSD LTDDMLAWKARAALRAGTQAQWPQVLAAINAMSEEARKDPAWSYWKARALLATAPPNIPTAVSTPQGVTQTISIAPQRAE ALAMLQALASPRGFYEQLALEELGQKITVPAQPAPLTAAEKEAARLNPGLNRAAYAITIGLRPEGVREWNYSTNLHKRNG EGERAGMGDRELLAAAQFACDRQIWDRCINTSERTRTETDFDQRFPVPFREAVVKRSREVGLDPAYVYGLIRQESRFIMD ARSGPGASGLMQIMPATARETARRIGLAGFTPDQINDRDTNITIGTGYLKLALDAFEGSMAMAAAAYNAGPGRPRVWRGQ PGSPVLDAAIWAENVPFGETRDYVKKVLSNTTNYAAILTGQPQSLKARLGMVGPRDASLPEVNKDLP
Sequences:
>Translated_707_residues MLYKKNFNAAFFAAAYATLSLSLLVPAAAQNTSSNGNGSNGDNLILEMNKAFRRSDKGRLAQMLPQARGHALEPWAAYWE LKTRLGEASAQEVQDFLARYAGTYQEDRLRNDWLLLLGQRRDWAAFAAEYPNYRMNDDREVRCYALLVEHLKNPALDARL SDEVRKNWYAQRDADDGCTAAADRLVGAQNLTTQDVWQKARIATEANRPRAAAGAVQIIAPEAMDLLTELNSSPIRFLAG KHLALRKVRKEIITLALIKMATTDVEGAAFQLESKWAVQLNAEERNWVWGVIGKQAATRLGTVPGSDALQYFARVNNDSD LTDDMLAWKARAALRAGTQAQWPQVLAAINAMSEEARKDPAWSYWKARALLATAPPNIPTAVSTPQGVTQTISIAPQRAE ALAMLQALASPRGFYEQLALEELGQKITVPAQPAPLTAAEKEAARLNPGLNRAAYAITIGLRPEGVREWNYSTNLHKRNG EGERAGMGDRELLAAAQFACDRQIWDRCINTSERTRTETDFDQRFPVPFREAVVKRSREVGLDPAYVYGLIRQESRFIMD ARSGPGASGLMQIMPATARETARRIGLAGFTPDQINDRDTNITIGTGYLKLALDAFEGSMAMAAAAYNAGPGRPRVWRGQ PGSPVLDAAIWAENVPFGETRDYVKKVLSNTTNYAAILTGQPQSLKARLGMVGPRDASLPEVNKDLP >Mature_707_residues MLYKKNFNAAFFAAAYATLSLSLLVPAAAQNTSSNGNGSNGDNLILEMNKAFRRSDKGRLAQMLPQARGHALEPWAAYWE LKTRLGEASAQEVQDFLARYAGTYQEDRLRNDWLLLLGQRRDWAAFAAEYPNYRMNDDREVRCYALLVEHLKNPALDARL SDEVRKNWYAQRDADDGCTAAADRLVGAQNLTTQDVWQKARIATEANRPRAAAGAVQIIAPEAMDLLTELNSSPIRFLAG KHLALRKVRKEIITLALIKMATTDVEGAAFQLESKWAVQLNAEERNWVWGVIGKQAATRLGTVPGSDALQYFARVNNDSD LTDDMLAWKARAALRAGTQAQWPQVLAAINAMSEEARKDPAWSYWKARALLATAPPNIPTAVSTPQGVTQTISIAPQRAE ALAMLQALASPRGFYEQLALEELGQKITVPAQPAPLTAAEKEAARLNPGLNRAAYAITIGLRPEGVREWNYSTNLHKRNG EGERAGMGDRELLAAAQFACDRQIWDRCINTSERTRTETDFDQRFPVPFREAVVKRSREVGLDPAYVYGLIRQESRFIMD ARSGPGASGLMQIMPATARETARRIGLAGFTPDQINDRDTNITIGTGYLKLALDAFEGSMAMAAAAYNAGPGRPRVWRGQ PGSPVLDAAIWAENVPFGETRDYVKKVLSNTTNYAAILTGQPQSLKARLGMVGPRDASLPEVNKDLP
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasm. Note=Tightly associated with the murein sacculus (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=334, Percent_Identity=29.940119760479, Blast_Score=146, Evalue=4e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016026 - InterPro: IPR008258 - InterPro: IPR012289 - InterPro: IPR008939 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 77873; Mature: 77873
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLYKKNFNAAFFAAAYATLSLSLLVPAAAQNTSSNGNGSNGDNLILEMNKAFRRSDKGRL CCEECCCCHHHHHHHHHHHHHHHEECHHHCCCCCCCCCCCCCCEEEEECHHHCCCCCHHH AQMLPQARGHALEPWAAYWELKTRLGEASAQEVQDFLARYAGTYQEDRLRNDWLLLLGQR HHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHCCCCEEEEEECC RDWAAFAAEYPNYRMNDDREVRCYALLVEHLKNPALDARLSDEVRKNWYAQRDADDGCTA CCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHH AADRLVGAQNLTTQDVWQKARIATEANRPRAAAGAVQIIAPEAMDLLTELNSSPIRFLAG HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHCEEEEECHHHHHHHHHCCCCCCHHHHC KHLALRKVRKEIITLALIKMATTDVEGAAFQLESKWAVQLNAEERNWVWGVIGKQAATRL CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCCCEEEEEHHHHHHHHH GTVPGSDALQYFARVNNDSDLTDDMLAWKARAALRAGTQAQWPQVLAAINAMSEEARKDP CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC AWSYWKARALLATAPPNIPTAVSTPQGVTQTISIAPQRAEALAMLQALASPRGFYEQLAL CHHHHHHHEEEEECCCCCCCCCCCCCCCHHHEECCCHHHHHHHHHHHHHCCHHHHHHHHH EELGQKITVPAQPAPLTAAEKEAARLNPGLNRAAYAITIGLRPEGVREWNYSTNLHKRNG HHCCCEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC EGERAGMGDRELLAAAQFACDRQIWDRCINTSERTRTETDFDQRFPVPFREAVVKRSREV CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHCCCCCHHHHHHHHHHHC GLDPAYVYGLIRQESRFIMDARSGPGASGLMQIMPATARETARRIGLAGFTPDQINDRDT CCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCC NITIGTGYLKLALDAFEGSMAMAAAAYNAGPGRPRVWRGQPGSPVLDAAIWAENVPFGET EEEEECCCEEEEHHHHCCCHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHCCCCCCCH RDYVKKVLSNTTNYAAILTGQPQSLKARLGMVGPRDASLPEVNKDLP HHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLYKKNFNAAFFAAAYATLSLSLLVPAAAQNTSSNGNGSNGDNLILEMNKAFRRSDKGRL CCEECCCCHHHHHHHHHHHHHHHEECHHHCCCCCCCCCCCCCCEEEEECHHHCCCCCHHH AQMLPQARGHALEPWAAYWELKTRLGEASAQEVQDFLARYAGTYQEDRLRNDWLLLLGQR HHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHCCCCEEEEEECC RDWAAFAAEYPNYRMNDDREVRCYALLVEHLKNPALDARLSDEVRKNWYAQRDADDGCTA CCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHH AADRLVGAQNLTTQDVWQKARIATEANRPRAAAGAVQIIAPEAMDLLTELNSSPIRFLAG HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHCEEEEECHHHHHHHHHCCCCCCHHHHC KHLALRKVRKEIITLALIKMATTDVEGAAFQLESKWAVQLNAEERNWVWGVIGKQAATRL CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCCCEEEEEHHHHHHHHH GTVPGSDALQYFARVNNDSDLTDDMLAWKARAALRAGTQAQWPQVLAAINAMSEEARKDP CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC AWSYWKARALLATAPPNIPTAVSTPQGVTQTISIAPQRAEALAMLQALASPRGFYEQLAL CHHHHHHHEEEEECCCCCCCCCCCCCCCHHHEECCCHHHHHHHHHHHHHCCHHHHHHHHH EELGQKITVPAQPAPLTAAEKEAARLNPGLNRAAYAITIGLRPEGVREWNYSTNLHKRNG HHCCCEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC EGERAGMGDRELLAAAQFACDRQIWDRCINTSERTRTETDFDQRFPVPFREAVVKRSREV CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHCCCCCHHHHHHHHHHHC GLDPAYVYGLIRQESRFIMDARSGPGASGLMQIMPATARETARRIGLAGFTPDQINDRDT CCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCC NITIGTGYLKLALDAFEGSMAMAAAAYNAGPGRPRVWRGQPGSPVLDAAIWAENVPFGET EEEEECCCEEEEHHHHCCCHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHCCCCCCCH RDYVKKVLSNTTNYAAILTGQPQSLKARLGMVGPRDASLPEVNKDLP HHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]