| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ifcA [H]
Identifier: 91786544
GI number: 91786544
Start: 646937
End: 648376
Strand: Direct
Name: ifcA [H]
Synonym: Bpro_0639
Alternate gene names: 91786544
Gene position: 646937-648376 (Clockwise)
Preceding gene: 91786543
Following gene: 91786545
Centisome position: 12.44
GC content: 66.67
Gene sequence:
>1440_bases ATGCTGATTAAACGTCAAAGGGAGTCGCAAGAGACGCTGGATGTCCTGGTGATTGGCGGGGGCAATGCCGCGCTGTGCGC CGCGTTGATGGCGCGGGAGGCCGGCGCCAGCGTGCTGGTGCTGGAGTCGGCGCCGCGCGAGTGGCGTGGCGGCAATTCCA GCCACACGCGCAACCTGCGCTGCATGCATGAGTCGCCGCAGGACGTGCTGACAGACGCCTACCCCGAAGAAGAGTACTGG CAAGACCTGCTCAAGGTCACAGGAGGGCAGACCAACGAGCAGCTGGCGCGCCTGGCGATACGCGAATCGTCGCGCTGCCG CGACTGGATGCGCCGGCACGGGGTGCGCTTTCAGCCTTCGTTGTCGGGCACGCTGCACCTGTCGCGCACCAATGCCTTTT TCATGGGCGGCGGCAAGGCCTTGATGAACGCCTACTACCGCAGTGCCGGGCGCCTCGGTGTACAGGTCCGCTACGACGCG CCCGCCGATCGCCTGGAGCTGCGCGATGGCCGCTTCGTGGCCGCGCACTGCGGCGCCGAGCGGATTGAGGCCCGCGCCTG CGTGGTGGCCAGTGGCGGCTTCGAGTCCAACCGGGAGTGGCTGCGCGAAGCCTGGGGCCAGAATGAAGCGGGCGAGTGGC CGGCCGACAACTTTGCCATCCGCGGCACGCGCTTTAACCAGGGCGTGCTGCTGCGCGACCTGATGGCCCAGGGGGCGGAC ACCATTGGCGATCCGACGCAAAGCCACTCGGTCGCCATTGACGCGCGCGCACCGCTGTACGACGGCGGCATCTGCACCCG CGTCGACTGTGTGTCGCTCGGTGTGGTGGTCAACAAACACGCCCAGCGTTTTTACGACGAGGGCGAGGACTTCTGGCCCA AGCGCTACGCCATCTGGGGCCGGCTGGTGGCGATGCAGCCCGGGCAGCTGGCTTACTCGGTGATCGACGCCAAGGCCGTG GGCCGCTTCATGCCGCCGGTGTTCCCCGGCGAAAAAGCCGATTCATTGGAGCAACTGGCGCGCCAGCTGGGCCTGGAGGT GCAGGCGTTTATGCGCACGGTGAATGACTACAACGCGGCCTGCCACGTTGGCAGCTTCGACCATGCCGTGCTCGACGATT GCCATACCGAAGGCTTGTCCCCGGCCAAGACCCATTGGGCCCGGCCCCTGGATACGGCCCCGTTTTACGGCTATGCGCTC AAGCCCGGCATCACCTTCACCTACCTGGGCATGAAGGTCAACGAACAGGCTGCCGTGCACTTTGGCGGCCAGCCCAGTCC CAACCTGTTTGCCGCCGGTGAAATCATGGCCGGCAACGTGCTGGGCAAGGGCTACACCGCCGGCGTCGGCATGACCATAG GCACAGCGTTTGGCCGGATTGCCGGCACCCAGGCCGCCCGTGCGGCGCTGAACCACGGAGCGCGACATGCAGCAGCTTGA
Upstream 100 bases:
>100_bases GACAATGCGGTCGGCGGCGGCGGGCCGTCCAGCGAATTTGCCGCGTTTATCGCGAGCGAACAAAAGATCTGGAGCGATAT CGTCAAGCGCGCCGGCATCC
Downstream 100 bases:
>100_bases AGCCCTGACCCGCGAAGCGTGCGCGCTGGCGGTCGGTGACCTGCCATTGACCCCTGTCGAGGCCGAAGTCGGTCGGCAAA TGCAGATCTGCAACGCCTGC
Product: tricarballylate dehydrogenase
Products: NA
Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]
Number of amino acids: Translated: 479; Mature: 479
Protein sequence:
>479_residues MLIKRQRESQETLDVLVIGGGNAALCAALMAREAGASVLVLESAPREWRGGNSSHTRNLRCMHESPQDVLTDAYPEEEYW QDLLKVTGGQTNEQLARLAIRESSRCRDWMRRHGVRFQPSLSGTLHLSRTNAFFMGGGKALMNAYYRSAGRLGVQVRYDA PADRLELRDGRFVAAHCGAERIEARACVVASGGFESNREWLREAWGQNEAGEWPADNFAIRGTRFNQGVLLRDLMAQGAD TIGDPTQSHSVAIDARAPLYDGGICTRVDCVSLGVVVNKHAQRFYDEGEDFWPKRYAIWGRLVAMQPGQLAYSVIDAKAV GRFMPPVFPGEKADSLEQLARQLGLEVQAFMRTVNDYNAACHVGSFDHAVLDDCHTEGLSPAKTHWARPLDTAPFYGYAL KPGITFTYLGMKVNEQAAVHFGGQPSPNLFAAGEIMAGNVLGKGYTAGVGMTIGTAFGRIAGTQAARAALNHGARHAAA
Sequences:
>Translated_479_residues MLIKRQRESQETLDVLVIGGGNAALCAALMAREAGASVLVLESAPREWRGGNSSHTRNLRCMHESPQDVLTDAYPEEEYW QDLLKVTGGQTNEQLARLAIRESSRCRDWMRRHGVRFQPSLSGTLHLSRTNAFFMGGGKALMNAYYRSAGRLGVQVRYDA PADRLELRDGRFVAAHCGAERIEARACVVASGGFESNREWLREAWGQNEAGEWPADNFAIRGTRFNQGVLLRDLMAQGAD TIGDPTQSHSVAIDARAPLYDGGICTRVDCVSLGVVVNKHAQRFYDEGEDFWPKRYAIWGRLVAMQPGQLAYSVIDAKAV GRFMPPVFPGEKADSLEQLARQLGLEVQAFMRTVNDYNAACHVGSFDHAVLDDCHTEGLSPAKTHWARPLDTAPFYGYAL KPGITFTYLGMKVNEQAAVHFGGQPSPNLFAAGEIMAGNVLGKGYTAGVGMTIGTAFGRIAGTQAARAALNHGARHAAA >Mature_479_residues MLIKRQRESQETLDVLVIGGGNAALCAALMAREAGASVLVLESAPREWRGGNSSHTRNLRCMHESPQDVLTDAYPEEEYW QDLLKVTGGQTNEQLARLAIRESSRCRDWMRRHGVRFQPSLSGTLHLSRTNAFFMGGGKALMNAYYRSAGRLGVQVRYDA PADRLELRDGRFVAAHCGAERIEARACVVASGGFESNREWLREAWGQNEAGEWPADNFAIRGTRFNQGVLLRDLMAQGAD TIGDPTQSHSVAIDARAPLYDGGICTRVDCVSLGVVVNKHAQRFYDEGEDFWPKRYAIWGRLVAMQPGQLAYSVIDAKAV GRFMPPVFPGEKADSLEQLARQLGLEVQAFMRTVNDYNAACHVGSFDHAVLDDCHTEGLSPAKTHWARPLDTAPFYGYAL KPGITFTYLGMKVNEQAAVHFGGQPSPNLFAAGEIMAGNVLGKGYTAGVGMTIGTAFGRIAGTQAARAALNHGARHAAA
Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 52245; Mature: 52245
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIKRQRESQETLDVLVIGGGNAALCAALMAREAGASVLVLESAPREWRGGNSSHTRNLR CCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCCCCCEE CMHESPQDVLTDAYPEEEYWQDLLKVTGGQTNEQLARLAIRESSRCRDWMRRHGVRFQPS EECCCCHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCEECCC LSGTLHLSRTNAFFMGGGKALMNAYYRSAGRLGVQVRYDAPADRLELRDGRFVAAHCGAE CCCEEEEEECCEEEECCCHHHHHHHHHCCCCEEEEEEECCCCHHEECCCCCEEEECCCHH RIEARACVVASGGFESNREWLREAWGQNEAGEWPADNFAIRGTRFNQGVLLRDLMAQGAD HHCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCC TIGDPTQSHSVAIDARAPLYDGGICTRVDCVSLGVVVNKHAQRFYDEGEDFWPKRYAIWG CCCCCCCCCCEEEECCCCEECCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH RLVAMQPGQLAYSVIDAKAVGRFMPPVFPGEKADSLEQLARQLGLEVQAFMRTVNDYNAA EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCE CHVGSFDHAVLDDCHTEGLSPAKTHWARPLDTAPFYGYALKPGITFTYLGMKVNEQAAVH EECCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCEEECCCCEEEEEEEEECCCEEEE FGGQPSPNLFAAGEIMAGNVLGKGYTAGVGMTIGTAFGRIAGTQAARAALNHGARHAAA ECCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCC >Mature Secondary Structure MLIKRQRESQETLDVLVIGGGNAALCAALMAREAGASVLVLESAPREWRGGNSSHTRNLR CCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCHHHCCCCCCCCCCEE CMHESPQDVLTDAYPEEEYWQDLLKVTGGQTNEQLARLAIRESSRCRDWMRRHGVRFQPS EECCCCHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCEECCC LSGTLHLSRTNAFFMGGGKALMNAYYRSAGRLGVQVRYDAPADRLELRDGRFVAAHCGAE CCCEEEEEECCEEEECCCHHHHHHHHHCCCCEEEEEEECCCCHHEECCCCCEEEECCCHH RIEARACVVASGGFESNREWLREAWGQNEAGEWPADNFAIRGTRFNQGVLLRDLMAQGAD HHCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCC TIGDPTQSHSVAIDARAPLYDGGICTRVDCVSLGVVVNKHAQRFYDEGEDFWPKRYAIWG CCCCCCCCCCEEEECCCCEECCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH RLVAMQPGQLAYSVIDAKAVGRFMPPVFPGEKADSLEQLARQLGLEVQAFMRTVNDYNAA EEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCE CHVGSFDHAVLDDCHTEGLSPAKTHWARPLDTAPFYGYALKPGITFTYLGMKVNEQAAVH EECCCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCEEECCCCEEEEEEEEECCCEEEE FGGQPSPNLFAAGEIMAGNVLGKGYTAGVGMTIGTAFGRIAGTQAARAALNHGARHAAA ECCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10455032; 10581549 [H]