Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is citB [H]

Identifier: 91786545

GI number: 91786545

Start: 648363

End: 649550

Strand: Direct

Name: citB [H]

Synonym: Bpro_0640

Alternate gene names: 91786545

Gene position: 648363-649550 (Clockwise)

Preceding gene: 91786544

Following gene: 91786546

Centisome position: 12.47

GC content: 66.16

Gene sequence:

>1188_bases
ATGCAGCAGCTTGAAGCCCTGACCCGCGAAGCGTGCGCGCTGGCGGTCGGTGACCTGCCATTGACCCCTGTCGAGGCCGA
AGTCGGTCGGCAAATGCAGATCTGCAACGCCTGCCGCTACTGCGAAGGTTTTTGCGCGGTGTTCCCGGCCATGACACGCC
GGCTGGAGTTTGGCAAGGCCGACATCCACTACCTGGCCAACCTCTGCCACAACTGCGGCGCCTGCCTGCACGCCTGCCAG
TACGCGCCGCCGCACGAGTTTGCCGTCAACGTGCCGCAGGCCATGGCGCAGGTGCGCGCCCAGACCTATGCCGACTACGC
CTGGCCGCCGGCCCTGGGCGCCCTGTACAAGCGCAACGGCCTGACGCTGGCATTGGCGCTGGCCACCGGACTGGCACTGT
TCCTGGTGCTCGCCCTGGTGATGAAGGGCACGCTGCTGCATGAACCGCTGGCGGGCAACTTCTACGCGATCTTCCCGCAC
AAGCTGCTGGTCTCCATGTTCGCGCCGATCTTCCTGTTTGCCGCGCTGGCGCTGGGTTTGGGCGTGCGCAGGTTCTGGCG
CGATGTGTCGCCGGGCGACGCATCGGGGGCCACCGCGGTTGATGCCATGACGCGGGAAGCGGCAGTCGAGGCCGCCACGG
ATGCACTGCGCCTGAAGTACCTCGACGGCGGGCATGGCGAAGGCTGCAATGAAACAGACGATGCCTTCACCTTGTGGCGC
CGGCGTTTTCACCACCTCACGTTTTACGGTTTCATGCTGTGTTTTGCAGCCACCTGCGTGGCCACGCTTTACCACTACCT
GTTGGGCCTGCAGGCGCCTTATGCGCTGAACAGCCTGCCGGTATTGCTGGGGACAGTGGGGGGCGTGGGCCTGCTGCTGG
GTCCGGCGGGTTTGTTGTGGCTCAACCTGCGGCGCCACCCGATGCACGGCGATGGCGCCCAGAAGCCGATGGACCGCGGC
TTCATCGCCCTGCTGTTTCTCACCAGCCTGACCGGCCTGGCCCTGCTGGCCTGGCGCGATACATCGGCCATGGCCCTGCT
GCTGGCGGTTCACCTGGGCGCGGTGATGGCCCTGTTTGCCACCCTGCCGTACGGAAAATTTGCGCATGGGGTGTACCGCT
GTGCCGCCCTGCTGAAGTGGGCGACGGAAAAACGCCTGCCGACCGGGCTGCGGCTCGGCGAAGACTGA

Upstream 100 bases:

>100_bases
AAGGGCTACACCGCCGGCGTCGGCATGACCATAGGCACAGCGTTTGGCCGGATTGCCGGCACCCAGGCCGCCCGTGCGGC
GCTGAACCACGGAGCGCGAC

Downstream 100 bases:

>100_bases
GAGGCTGAGAGTCTTTTGTTCCTACCCGCTTATCACGCCAAAACGCACCCACTCGTCGTTGCAAATGCGCGCCATAGCCC
AAGCTATGGCTGTGCTTTGC

Product: citrate utilization protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MQQLEALTREACALAVGDLPLTPVEAEVGRQMQICNACRYCEGFCAVFPAMTRRLEFGKADIHYLANLCHNCGACLHACQ
YAPPHEFAVNVPQAMAQVRAQTYADYAWPPALGALYKRNGLTLALALATGLALFLVLALVMKGTLLHEPLAGNFYAIFPH
KLLVSMFAPIFLFAALALGLGVRRFWRDVSPGDASGATAVDAMTREAAVEAATDALRLKYLDGGHGEGCNETDDAFTLWR
RRFHHLTFYGFMLCFAATCVATLYHYLLGLQAPYALNSLPVLLGTVGGVGLLLGPAGLLWLNLRRHPMHGDGAQKPMDRG
FIALLFLTSLTGLALLAWRDTSAMALLLAVHLGAVMALFATLPYGKFAHGVYRCAALLKWATEKRLPTGLRLGED

Sequences:

>Translated_395_residues
MQQLEALTREACALAVGDLPLTPVEAEVGRQMQICNACRYCEGFCAVFPAMTRRLEFGKADIHYLANLCHNCGACLHACQ
YAPPHEFAVNVPQAMAQVRAQTYADYAWPPALGALYKRNGLTLALALATGLALFLVLALVMKGTLLHEPLAGNFYAIFPH
KLLVSMFAPIFLFAALALGLGVRRFWRDVSPGDASGATAVDAMTREAAVEAATDALRLKYLDGGHGEGCNETDDAFTLWR
RRFHHLTFYGFMLCFAATCVATLYHYLLGLQAPYALNSLPVLLGTVGGVGLLLGPAGLLWLNLRRHPMHGDGAQKPMDRG
FIALLFLTSLTGLALLAWRDTSAMALLLAVHLGAVMALFATLPYGKFAHGVYRCAALLKWATEKRLPTGLRLGED
>Mature_395_residues
MQQLEALTREACALAVGDLPLTPVEAEVGRQMQICNACRYCEGFCAVFPAMTRRLEFGKADIHYLANLCHNCGACLHACQ
YAPPHEFAVNVPQAMAQVRAQTYADYAWPPALGALYKRNGLTLALALATGLALFLVLALVMKGTLLHEPLAGNFYAIFPH
KLLVSMFAPIFLFAALALGLGVRRFWRDVSPGDASGATAVDAMTREAAVEAATDALRLKYLDGGHGEGCNETDDAFTLWR
RRFHHLTFYGFMLCFAATCVATLYHYLLGLQAPYALNSLPVLLGTVGGVGLLLGPAGLLWLNLRRHPMHGDGAQKPMDRG
FIALLFLTSLTGLALLAWRDTSAMALLLAVHLGAVMALFATLPYGKFAHGVYRCAALLKWATEKRLPTGLRLGED

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012830 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42854; Mature: 42854

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQLEALTREACALAVGDLPLTPVEAEVGRQMQICNACRYCEGFCAVFPAMTRRLEFGKA
CCHHHHHHHHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
DIHYLANLCHNCGACLHACQYAPPHEFAVNVPQAMAQVRAQTYADYAWPPALGALYKRNG
HHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
LTLALALATGLALFLVLALVMKGTLLHEPLAGNFYAIFPHKLLVSMFAPIFLFAALALGL
CCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
GVRRFWRDVSPGDASGATAVDAMTREAAVEAATDALRLKYLDGGHGEGCNETDDAFTLWR
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHH
RRFHHLTFYGFMLCFAATCVATLYHYLLGLQAPYALNSLPVLLGTVGGVGLLLGPAGLLW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHE
LNLRRHPMHGDGAQKPMDRGFIALLFLTSLTGLALLAWRDTSAMALLLAVHLGAVMALFA
EHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
TLPYGKFAHGVYRCAALLKWATEKRLPTGLRLGED
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MQQLEALTREACALAVGDLPLTPVEAEVGRQMQICNACRYCEGFCAVFPAMTRRLEFGKA
CCHHHHHHHHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
DIHYLANLCHNCGACLHACQYAPPHEFAVNVPQAMAQVRAQTYADYAWPPALGALYKRNG
HHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
LTLALALATGLALFLVLALVMKGTLLHEPLAGNFYAIFPHKLLVSMFAPIFLFAALALGL
CCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
GVRRFWRDVSPGDASGATAVDAMTREAAVEAATDALRLKYLDGGHGEGCNETDDAFTLWR
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHH
RRFHHLTFYGFMLCFAATCVATLYHYLLGLQAPYALNSLPVLLGTVGGVGLLLGPAGLLW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHE
LNLRRHPMHGDGAQKPMDRGFIALLFLTSLTGLALLAWRDTSAMALLLAVHLGAVMALFA
EHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
TLPYGKFAHGVYRCAALLKWATEKRLPTGLRLGED
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11677609; 1718953 [H]