| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is citB [H]
Identifier: 91786545
GI number: 91786545
Start: 648363
End: 649550
Strand: Direct
Name: citB [H]
Synonym: Bpro_0640
Alternate gene names: 91786545
Gene position: 648363-649550 (Clockwise)
Preceding gene: 91786544
Following gene: 91786546
Centisome position: 12.47
GC content: 66.16
Gene sequence:
>1188_bases ATGCAGCAGCTTGAAGCCCTGACCCGCGAAGCGTGCGCGCTGGCGGTCGGTGACCTGCCATTGACCCCTGTCGAGGCCGA AGTCGGTCGGCAAATGCAGATCTGCAACGCCTGCCGCTACTGCGAAGGTTTTTGCGCGGTGTTCCCGGCCATGACACGCC GGCTGGAGTTTGGCAAGGCCGACATCCACTACCTGGCCAACCTCTGCCACAACTGCGGCGCCTGCCTGCACGCCTGCCAG TACGCGCCGCCGCACGAGTTTGCCGTCAACGTGCCGCAGGCCATGGCGCAGGTGCGCGCCCAGACCTATGCCGACTACGC CTGGCCGCCGGCCCTGGGCGCCCTGTACAAGCGCAACGGCCTGACGCTGGCATTGGCGCTGGCCACCGGACTGGCACTGT TCCTGGTGCTCGCCCTGGTGATGAAGGGCACGCTGCTGCATGAACCGCTGGCGGGCAACTTCTACGCGATCTTCCCGCAC AAGCTGCTGGTCTCCATGTTCGCGCCGATCTTCCTGTTTGCCGCGCTGGCGCTGGGTTTGGGCGTGCGCAGGTTCTGGCG CGATGTGTCGCCGGGCGACGCATCGGGGGCCACCGCGGTTGATGCCATGACGCGGGAAGCGGCAGTCGAGGCCGCCACGG ATGCACTGCGCCTGAAGTACCTCGACGGCGGGCATGGCGAAGGCTGCAATGAAACAGACGATGCCTTCACCTTGTGGCGC CGGCGTTTTCACCACCTCACGTTTTACGGTTTCATGCTGTGTTTTGCAGCCACCTGCGTGGCCACGCTTTACCACTACCT GTTGGGCCTGCAGGCGCCTTATGCGCTGAACAGCCTGCCGGTATTGCTGGGGACAGTGGGGGGCGTGGGCCTGCTGCTGG GTCCGGCGGGTTTGTTGTGGCTCAACCTGCGGCGCCACCCGATGCACGGCGATGGCGCCCAGAAGCCGATGGACCGCGGC TTCATCGCCCTGCTGTTTCTCACCAGCCTGACCGGCCTGGCCCTGCTGGCCTGGCGCGATACATCGGCCATGGCCCTGCT GCTGGCGGTTCACCTGGGCGCGGTGATGGCCCTGTTTGCCACCCTGCCGTACGGAAAATTTGCGCATGGGGTGTACCGCT GTGCCGCCCTGCTGAAGTGGGCGACGGAAAAACGCCTGCCGACCGGGCTGCGGCTCGGCGAAGACTGA
Upstream 100 bases:
>100_bases AAGGGCTACACCGCCGGCGTCGGCATGACCATAGGCACAGCGTTTGGCCGGATTGCCGGCACCCAGGCCGCCCGTGCGGC GCTGAACCACGGAGCGCGAC
Downstream 100 bases:
>100_bases GAGGCTGAGAGTCTTTTGTTCCTACCCGCTTATCACGCCAAAACGCACCCACTCGTCGTTGCAAATGCGCGCCATAGCCC AAGCTATGGCTGTGCTTTGC
Product: citrate utilization protein B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 395; Mature: 395
Protein sequence:
>395_residues MQQLEALTREACALAVGDLPLTPVEAEVGRQMQICNACRYCEGFCAVFPAMTRRLEFGKADIHYLANLCHNCGACLHACQ YAPPHEFAVNVPQAMAQVRAQTYADYAWPPALGALYKRNGLTLALALATGLALFLVLALVMKGTLLHEPLAGNFYAIFPH KLLVSMFAPIFLFAALALGLGVRRFWRDVSPGDASGATAVDAMTREAAVEAATDALRLKYLDGGHGEGCNETDDAFTLWR RRFHHLTFYGFMLCFAATCVATLYHYLLGLQAPYALNSLPVLLGTVGGVGLLLGPAGLLWLNLRRHPMHGDGAQKPMDRG FIALLFLTSLTGLALLAWRDTSAMALLLAVHLGAVMALFATLPYGKFAHGVYRCAALLKWATEKRLPTGLRLGED
Sequences:
>Translated_395_residues MQQLEALTREACALAVGDLPLTPVEAEVGRQMQICNACRYCEGFCAVFPAMTRRLEFGKADIHYLANLCHNCGACLHACQ YAPPHEFAVNVPQAMAQVRAQTYADYAWPPALGALYKRNGLTLALALATGLALFLVLALVMKGTLLHEPLAGNFYAIFPH KLLVSMFAPIFLFAALALGLGVRRFWRDVSPGDASGATAVDAMTREAAVEAATDALRLKYLDGGHGEGCNETDDAFTLWR RRFHHLTFYGFMLCFAATCVATLYHYLLGLQAPYALNSLPVLLGTVGGVGLLLGPAGLLWLNLRRHPMHGDGAQKPMDRG FIALLFLTSLTGLALLAWRDTSAMALLLAVHLGAVMALFATLPYGKFAHGVYRCAALLKWATEKRLPTGLRLGED >Mature_395_residues MQQLEALTREACALAVGDLPLTPVEAEVGRQMQICNACRYCEGFCAVFPAMTRRLEFGKADIHYLANLCHNCGACLHACQ YAPPHEFAVNVPQAMAQVRAQTYADYAWPPALGALYKRNGLTLALALATGLALFLVLALVMKGTLLHEPLAGNFYAIFPH KLLVSMFAPIFLFAALALGLGVRRFWRDVSPGDASGATAVDAMTREAAVEAATDALRLKYLDGGHGEGCNETDDAFTLWR RRFHHLTFYGFMLCFAATCVATLYHYLLGLQAPYALNSLPVLLGTVGGVGLLLGPAGLLWLNLRRHPMHGDGAQKPMDRG FIALLFLTSLTGLALLAWRDTSAMALLLAVHLGAVMALFATLPYGKFAHGVYRCAALLKWATEKRLPTGLRLGED
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012830 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42854; Mature: 42854
Theoretical pI: Translated: 8.00; Mature: 8.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQLEALTREACALAVGDLPLTPVEAEVGRQMQICNACRYCEGFCAVFPAMTRRLEFGKA CCHHHHHHHHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH DIHYLANLCHNCGACLHACQYAPPHEFAVNVPQAMAQVRAQTYADYAWPPALGALYKRNG HHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCC LTLALALATGLALFLVLALVMKGTLLHEPLAGNFYAIFPHKLLVSMFAPIFLFAALALGL CCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH GVRRFWRDVSPGDASGATAVDAMTREAAVEAATDALRLKYLDGGHGEGCNETDDAFTLWR HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHH RRFHHLTFYGFMLCFAATCVATLYHYLLGLQAPYALNSLPVLLGTVGGVGLLLGPAGLLW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHE LNLRRHPMHGDGAQKPMDRGFIALLFLTSLTGLALLAWRDTSAMALLLAVHLGAVMALFA EHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH TLPYGKFAHGVYRCAALLKWATEKRLPTGLRLGED HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MQQLEALTREACALAVGDLPLTPVEAEVGRQMQICNACRYCEGFCAVFPAMTRRLEFGKA CCHHHHHHHHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH DIHYLANLCHNCGACLHACQYAPPHEFAVNVPQAMAQVRAQTYADYAWPPALGALYKRNG HHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCC LTLALALATGLALFLVLALVMKGTLLHEPLAGNFYAIFPHKLLVSMFAPIFLFAALALGL CCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH GVRRFWRDVSPGDASGATAVDAMTREAAVEAATDALRLKYLDGGHGEGCNETDDAFTLWR HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHH RRFHHLTFYGFMLCFAATCVATLYHYLLGLQAPYALNSLPVLLGTVGGVGLLLGPAGLLW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHE LNLRRHPMHGDGAQKPMDRGFIALLFLTSLTGLALLAWRDTSAMALLLAVHLGAVMALFA EHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH TLPYGKFAHGVYRCAALLKWATEKRLPTGLRLGED HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11677609; 1718953 [H]