| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yjeP [C]
Identifier: 91786541
GI number: 91786541
Start: 643273
End: 644367
Strand: Direct
Name: yjeP [C]
Synonym: Bpro_0636
Alternate gene names: 91786541
Gene position: 643273-644367 (Clockwise)
Preceding gene: 91786540
Following gene: 91786542
Centisome position: 12.37
GC content: 66.76
Gene sequence:
>1095_bases ATGAACCTGTCTGAGCTCGTCGCCTGGATGGACGACTCGTCGCTGCGCATCGTGCTGGCAGCCGGTGTCAGCGTTGTGCT GGCGCTGGTGGTGGCCCGCATCGGTGCCGCCATCGTGCTGCGCGTGACGCGTTCCATGCCGGTGCTGGCCAAGGTGGCGG AGCAATGCCGGTCCCCTGCACAGTTCCTGCTGCCATTGATTGCCTTGCAGGCCGTGTGGCACAGCGCACCCGATGCCTTC CCGCTGATCGGCGGAATACGCCATGCCAATGGCCTGTTGCTGCTGGCAACCCTGACCTGGGCGGGCATGCGCGCGGCACG CGGGGCAGCGCTGGGTGTGATCGGCTTGCACCCGGTCGATGTGGCTGACAACCTCAACGCCCGCCGCATCCACACGCAAA CCCGCATGCTGGCTCGCACCCTCATGTTCGTCGTGCTGCTGGCCGGGCTGGCCCTGATGTTGATGACCTTTCCCGGCGCC CGGCAGTTTGGGGCCAGCCTGCTGGCATCGGCCGGTGTGGCGGGGCTGGTGGTCGGCATTGCCGCGCGCCCCGTCTTCAG CAACCTGATCGCCGGCTTGCAGATTGCGCTGGCGCAGCCCATCCGCATTGACGACGTCCTGATCGTTCAGGGCGAGTGGG GGCGGGTCGAGGAAATCACCGGTGCCTATGTGGTGCTGAAGATCTGGGATGAGCGGCGCATGATCGTTCCGCTGCAATGG TTTATTGAAAACCCCTTCCAGAACTGGACGCGCAGCAGCGCGCAAATCATCGGCACCGTGCTGCTCTGGGTGGATTACCG CATGCCGATGGAGCCGCTGCGCCACGCCGCACTGCGGGCCTGCGAAGCGGCCCCTGAATGGGACAAGCGGCTGTGCCTGC TGCAGGTGGTGGAGGCGGGCGAGCACAGCATGCAGTTGCGCCTGCTGGTCACGTCGGCCAACTCCAGCCTGAACTGGGAT TTGCGCTGCAAGGTGCGCGAGGCGCTGGTGGATTTCATGCAGCGCGAGTACCCGCAATACCTGCCCCGCATGCGGGCAGA GCTGGCGCAAGCGCCGCAGCCCGGGCAGAACGCGGCGGGCGGGCTGGCCGGCTGA
Upstream 100 bases:
>100_bases AGGTGGCGCGTGCCAACGCCAAGCTGGCCGCGTCCCGGGTCAAGCCCCGGGTGGCGAAGGGCTGATGCATGCTGACAGGG CTGCGGTATGAGGCTGCGGT
Downstream 100 bases:
>100_bases GCCAAAGCCCGCGGGCCCGCAGCCCAAGGCAGGCAAAGCGGGCAGGCAGGGTGCGCATGCGATGATCAGGGGCATCACGA AAGGTGATGGTTGAACCTAG
Product: mechanosensitive ion channel protein MscS
Products: NA
Alternate protein names: Small-Conductance Mechanosensitive Channel; Mechanosensitive Ion Channel Family Protein; Mechanosensitive Ion Channel Protein MscS; Mechanosensitive Ion Channel MscS; Mscs Mechanosensitive Ion Channel; Mechanosensitive Ion Channel; Small-Conductance Mechanosensitive Ion Channel; Mechanosensitive Ion Channel Domain-Containing Protein; MscS Family Transporter; Mechanosensitive Ion Channel Protein; MscS Mechanosensitive Ion Channel Protein; Transporter MscS Family; Small-Conductance Mechanosensitive Channel-Like Protein; Mechanosensitive Channel Protein
Number of amino acids: Translated: 364; Mature: 364
Protein sequence:
>364_residues MNLSELVAWMDDSSLRIVLAAGVSVVLALVVARIGAAIVLRVTRSMPVLAKVAEQCRSPAQFLLPLIALQAVWHSAPDAF PLIGGIRHANGLLLLATLTWAGMRAARGAALGVIGLHPVDVADNLNARRIHTQTRMLARTLMFVVLLAGLALMLMTFPGA RQFGASLLASAGVAGLVVGIAARPVFSNLIAGLQIALAQPIRIDDVLIVQGEWGRVEEITGAYVVLKIWDERRMIVPLQW FIENPFQNWTRSSAQIIGTVLLWVDYRMPMEPLRHAALRACEAAPEWDKRLCLLQVVEAGEHSMQLRLLVTSANSSLNWD LRCKVREALVDFMQREYPQYLPRMRAELAQAPQPGQNAAGGLAG
Sequences:
>Translated_364_residues MNLSELVAWMDDSSLRIVLAAGVSVVLALVVARIGAAIVLRVTRSMPVLAKVAEQCRSPAQFLLPLIALQAVWHSAPDAF PLIGGIRHANGLLLLATLTWAGMRAARGAALGVIGLHPVDVADNLNARRIHTQTRMLARTLMFVVLLAGLALMLMTFPGA RQFGASLLASAGVAGLVVGIAARPVFSNLIAGLQIALAQPIRIDDVLIVQGEWGRVEEITGAYVVLKIWDERRMIVPLQW FIENPFQNWTRSSAQIIGTVLLWVDYRMPMEPLRHAALRACEAAPEWDKRLCLLQVVEAGEHSMQLRLLVTSANSSLNWD LRCKVREALVDFMQREYPQYLPRMRAELAQAPQPGQNAAGGLAG >Mature_364_residues MNLSELVAWMDDSSLRIVLAAGVSVVLALVVARIGAAIVLRVTRSMPVLAKVAEQCRSPAQFLLPLIALQAVWHSAPDAF PLIGGIRHANGLLLLATLTWAGMRAARGAALGVIGLHPVDVADNLNARRIHTQTRMLARTLMFVVLLAGLALMLMTFPGA RQFGASLLASAGVAGLVVGIAARPVFSNLIAGLQIALAQPIRIDDVLIVQGEWGRVEEITGAYVVLKIWDERRMIVPLQW FIENPFQNWTRSSAQIIGTVLLWVDYRMPMEPLRHAALRACEAAPEWDKRLCLLQVVEAGEHSMQLRLLVTSANSSLNWD LRCKVREALVDFMQREYPQYLPRMRAELAQAPQPGQNAAGGLAG
Specific function: Unknown
COG id: COG0668
COG function: function code M; Small-conductance mechanosensitive channel
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39745; Mature: 39745
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLSELVAWMDDSSLRIVLAAGVSVVLALVVARIGAAIVLRVTRSMPVLAKVAEQCRSPA CCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHH QFLLPLIALQAVWHSAPDAFPLIGGIRHANGLLLLATLTWAGMRAARGAALGVIGLHPVD HHHHHHHHHHHHHHCCCCCCHHHHCHHHCCCEEEEEHHHHHHHHHHCCCEEEEEECCCCC VADNLNARRIHTQTRMLARTLMFVVLLAGLALMLMTFPGARQFGASLLASAGVAGLVVGI CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHH AARPVFSNLIAGLQIALAQPIRIDDVLIVQGEWGRVEEITGAYVVLKIWDERRMIVPLQW HHHHHHHHHHHHHHHHHCCCCEECCEEEEECCCCCHHHHCCCEEEEEEECCCCEEEEHHH FIENPFQNWTRSSAQIIGTVLLWVDYRMPMEPLRHAALRACEAAPEWDKRLCLLQVVEAG HHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC EHSMQLRLLVTSANSSLNWDLRCKVREALVDFMQREYPQYLPRMRAELAQAPQPGQNAAG CCCEEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC GLAG CCCC >Mature Secondary Structure MNLSELVAWMDDSSLRIVLAAGVSVVLALVVARIGAAIVLRVTRSMPVLAKVAEQCRSPA CCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHH QFLLPLIALQAVWHSAPDAFPLIGGIRHANGLLLLATLTWAGMRAARGAALGVIGLHPVD HHHHHHHHHHHHHHCCCCCCHHHHCHHHCCCEEEEEHHHHHHHHHHCCCEEEEEECCCCC VADNLNARRIHTQTRMLARTLMFVVLLAGLALMLMTFPGARQFGASLLASAGVAGLVVGI CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHH AARPVFSNLIAGLQIALAQPIRIDDVLIVQGEWGRVEEITGAYVVLKIWDERRMIVPLQW HHHHHHHHHHHHHHHHHCCCCEECCEEEEECCCCCHHHHCCCEEEEEEECCCCEEEEHHH FIENPFQNWTRSSAQIIGTVLLWVDYRMPMEPLRHAALRACEAAPEWDKRLCLLQVVEAG HHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC EHSMQLRLLVTSANSSLNWDLRCKVREALVDFMQREYPQYLPRMRAELAQAPQPGQNAAG CCCEEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC GLAG CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA