| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91786463
Identifier: 91786463
GI number: 91786463
Start: 556162
End: 556812
Strand: Direct
Name: 91786463
Synonym: Bpro_0557
Alternate gene names: NA
Gene position: 556162-556812 (Clockwise)
Preceding gene: 91786462
Following gene: 91786464
Centisome position: 10.69
GC content: 62.67
Gene sequence:
>651_bases ATGAGCGGGAGTACCATTCTCAACCGGGGCCGGCCGGCCCCGGCACCTCAAATAAAGGCGGTCGACATGAAAGACCATAT CGAACGGGTACTGGCCGCAGTGTTCGGCGGCATTTTCCTGCTGCTGGCCTGCGTGGTGGCCGTCGAGACCATCTCCCGCA AGGTGTTCAACGTGTCGCTGCAGGGTGCTGACGAGCTGGGCGGCTATGCCCTGGCCGTGGGCTCGACCATCGCCTTCAGC CTGGCACTGATGGGGCGCAATCACATTCGGGTGGATGTGTTCCATGAGCGCTTTCCCCGCGCCATGCAGGCCTTCCTGAA CTGGTTCTCCATCGTCACGCTGGCCTCCTTTGGCACGTTCGTGGCCTGGATTGCAACCAAGGTCATCACCGACACCCTGC AGTACGGCAGCACGGCGCAGACACCCTGGGCCACGCCGCTGATCTGGCCGCAGGCGGTCTGGTACGCCGGCCTGGTGATT TTCGCCATGGTGTCTATCGGCTACGCGCTGCGCGCCAGCTGGCTGCTCCTGACAAAGCGTGTCGACACGCTGAACCATGA CTTCCATCCGAAGAGCGCCAAGGAAGAGCTGAAGGAAGAGCTCGATGACCTGGCCCAGCGCCAGTCCACAGAACAGGGAG CACAGCCATGA
Upstream 100 bases:
>100_bases CCAAGGTTTCGCTGCCAACCTGGGCCGAAGTCTGTGATAAATCCAACCCGGGCTGCTCCCAGAAGTGGCACGCCCAGGTC GCACCGGTGCTGGGTCTGAA
Downstream 100 bases:
>100_bases GCATCGGACTGTTTGGAATTGCATTCGTCGTGATGCTTGGCATGATGCTGGTCGGCATTCCGATCGCCGTCTCGATGGCG GCGGTGGGGATCGTGGGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: TRAP-Type Transport System Small Permease Component; Trap Transporter Transmembrane Protein; TRAP Transporter-DctQ Subunit; TRAP Transporter DctQ-Like Membrane Protein
Number of amino acids: Translated: 216; Mature: 215
Protein sequence:
>216_residues MSGSTILNRGRPAPAPQIKAVDMKDHIERVLAAVFGGIFLLLACVVAVETISRKVFNVSLQGADELGGYALAVGSTIAFS LALMGRNHIRVDVFHERFPRAMQAFLNWFSIVTLASFGTFVAWIATKVITDTLQYGSTAQTPWATPLIWPQAVWYAGLVI FAMVSIGYALRASWLLLTKRVDTLNHDFHPKSAKEELKEELDDLAQRQSTEQGAQP
Sequences:
>Translated_216_residues MSGSTILNRGRPAPAPQIKAVDMKDHIERVLAAVFGGIFLLLACVVAVETISRKVFNVSLQGADELGGYALAVGSTIAFS LALMGRNHIRVDVFHERFPRAMQAFLNWFSIVTLASFGTFVAWIATKVITDTLQYGSTAQTPWATPLIWPQAVWYAGLVI FAMVSIGYALRASWLLLTKRVDTLNHDFHPKSAKEELKEELDDLAQRQSTEQGAQP >Mature_215_residues SGSTILNRGRPAPAPQIKAVDMKDHIERVLAAVFGGIFLLLACVVAVETISRKVFNVSLQGADELGGYALAVGSTIAFSL ALMGRNHIRVDVFHERFPRAMQAFLNWFSIVTLASFGTFVAWIATKVITDTLQYGSTAQTPWATPLIWPQAVWYAGLVIF AMVSIGYALRASWLLLTKRVDTLNHDFHPKSAKEELKEELDDLAQRQSTEQGAQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23790; Mature: 23659
Theoretical pI: Translated: 8.48; Mature: 8.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGSTILNRGRPAPAPQIKAVDMKDHIERVLAAVFGGIFLLLACVVAVETISRKVFNVSL CCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE QGADELGGYALAVGSTIAFSLALMGRNHIRVDVFHERFPRAMQAFLNWFSIVTLASFGTF CCHHHHCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAWIATKVITDTLQYGSTAQTPWATPLIWPQAVWYAGLVIFAMVSIGYALRASWLLLTKR HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDTLNHDFHPKSAKEELKEELDDLAQRQSTEQGAQP HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SGSTILNRGRPAPAPQIKAVDMKDHIERVLAAVFGGIFLLLACVVAVETISRKVFNVSL CCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE QGADELGGYALAVGSTIAFSLALMGRNHIRVDVFHERFPRAMQAFLNWFSIVTLASFGTF CCHHHHCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAWIATKVITDTLQYGSTAQTPWATPLIWPQAVWYAGLVIFAMVSIGYALRASWLLLTKR HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDTLNHDFHPKSAKEELKEELDDLAQRQSTEQGAQP HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA