| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91786462
Identifier: 91786462
GI number: 91786462
Start: 555110
End: 556165
Strand: Direct
Name: 91786462
Synonym: Bpro_0556
Alternate gene names: NA
Gene position: 555110-556165 (Clockwise)
Preceding gene: 91786461
Following gene: 91786463
Centisome position: 10.67
GC content: 61.65
Gene sequence:
>1056_bases ATGTCATACCGTTCCCGCTTCAAGATTCTTGCCGCCGTGGCCGCGCTGGCCGCGACGCTGGTTCTGCCTGCGCACGCCCA GGAAAAAATCAAGTTCAAGGCCATCGGCCAGCCCCTGGCCACCGGCCTGATCCAGAAGAACAAGGAGCAGCCCTTCTTCG AGAATTTCGCCGCCAAAACCGGCCTGCCGATCGAGGTGGACTACAAGCCCATCGACACGCTGGGCATCAAGGACACCGAG CAGCTTCGGGTCATGAAGGCCGGCCTCTTTGACATCGTGTCGCTGCGGGTCTCGCAGAACTCGCGTGATGAGCCCACCAT CCTCGGTCTGGATCTCGTCGGCGCCAGCCCCGACTACGCCACCGGCCGCAAGGTGGCCAAAGCCTATTTCGACACGGTGG ACGCACGCCTGCAGCAGCAATTCAATGTCAAGCTGCTGGGCGTGTGGCCGTTCGGCCCGCAGATCCTCTTTTGCAAGAAG CCGATCGCCAAGCTGGCCGACATCAAGGGCATGAAGGTCCGCGTGTATGACCAAAACCTGGCCAAGTTCATCGAGCTGGT CGGGGGCACACCGGTGCCGGTGTCATTCGCTGACACCCACCAGTCGCTGTCGCTGGGCGTGGTCGATTGCGCGATCACCG GTCCGAGCTCCGCCAACTCGGCAGGCTGGCCTGAGGTGACCACGCACCAGCTGCCGCTGGGATTCCAGATGGCGCTCAAT GGCTATGCCATTTCCCTGAAAGCCTGGAACCAGCTCAAGCCTGACCAGCAGGTCAAATTGAAGGCGGCGTTCGACAAGCT CACCGACGAGATCTGGACCTACTCGGAGGAGCTATTCCAGGACGCGCTGAATTGCAACGCCGGCAAGGACCCCTGCACCA CCGGCAAGAAGTTCAAACTCGTCAACGTGGCCGTGACGCCGGCAGATGGTGAACTGGTGCGCAGCGCAGTCACCAAGGTT TCGCTGCCAACCTGGGCCGAAGTCTGTGATAAATCCAACCCGGGCTGCTCCCAGAAGTGGCACGCCCAGGTCGCACCGGT GCTGGGTCTGAAATGA
Upstream 100 bases:
>100_bases CCTTCCTTCGTCACTGCGCTGCCGCACGCGCTCGGCTACTGAATTCATTTCCCGCGACCTGTCGCAATCTTTCATCAACT TTTAACCACTGGAGCTCACC
Downstream 100 bases:
>100_bases GCGGGAGTACCATTCTCAACCGGGGCCGGCCGGCCCCGGCACCTCAAATAAAGGCGGTCGACATGAAAGACCATATCGAA CGGGTACTGGCCGCAGTGTT
Product: TRAP dicarboxylate transporter subunit DctP
Products: NA
Alternate protein names: Trap Dicarboxylate Transporter- Dctp Subunit; TRAP Dicarboxylate Transporter Subunit DctP; Trap Transporter Periplasmic Protein; TRAP Dicarboxylate Transporter-DctP Subunit; TRAP Transporter; TRAP-Type Transporter Periplasmic Component; TRAP Transporter Periplasmic Protein; Secreted Protein
Number of amino acids: Translated: 351; Mature: 350
Protein sequence:
>351_residues MSYRSRFKILAAVAALAATLVLPAHAQEKIKFKAIGQPLATGLIQKNKEQPFFENFAAKTGLPIEVDYKPIDTLGIKDTE QLRVMKAGLFDIVSLRVSQNSRDEPTILGLDLVGASPDYATGRKVAKAYFDTVDARLQQQFNVKLLGVWPFGPQILFCKK PIAKLADIKGMKVRVYDQNLAKFIELVGGTPVPVSFADTHQSLSLGVVDCAITGPSSANSAGWPEVTTHQLPLGFQMALN GYAISLKAWNQLKPDQQVKLKAAFDKLTDEIWTYSEELFQDALNCNAGKDPCTTGKKFKLVNVAVTPADGELVRSAVTKV SLPTWAEVCDKSNPGCSQKWHAQVAPVLGLK
Sequences:
>Translated_351_residues MSYRSRFKILAAVAALAATLVLPAHAQEKIKFKAIGQPLATGLIQKNKEQPFFENFAAKTGLPIEVDYKPIDTLGIKDTE QLRVMKAGLFDIVSLRVSQNSRDEPTILGLDLVGASPDYATGRKVAKAYFDTVDARLQQQFNVKLLGVWPFGPQILFCKK PIAKLADIKGMKVRVYDQNLAKFIELVGGTPVPVSFADTHQSLSLGVVDCAITGPSSANSAGWPEVTTHQLPLGFQMALN GYAISLKAWNQLKPDQQVKLKAAFDKLTDEIWTYSEELFQDALNCNAGKDPCTTGKKFKLVNVAVTPADGELVRSAVTKV SLPTWAEVCDKSNPGCSQKWHAQVAPVLGLK >Mature_350_residues SYRSRFKILAAVAALAATLVLPAHAQEKIKFKAIGQPLATGLIQKNKEQPFFENFAAKTGLPIEVDYKPIDTLGIKDTEQ LRVMKAGLFDIVSLRVSQNSRDEPTILGLDLVGASPDYATGRKVAKAYFDTVDARLQQQFNVKLLGVWPFGPQILFCKKP IAKLADIKGMKVRVYDQNLAKFIELVGGTPVPVSFADTHQSLSLGVVDCAITGPSSANSAGWPEVTTHQLPLGFQMALNG YAISLKAWNQLKPDQQVKLKAAFDKLTDEIWTYSEELFQDALNCNAGKDPCTTGKKFKLVNVAVTPADGELVRSAVTKVS LPTWAEVCDKSNPGCSQKWHAQVAPVLGLK
Specific function: Unknown
COG id: COG1638
COG function: function code G; TRAP-type C4-dicarboxylate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38259; Mature: 38127
Theoretical pI: Translated: 9.31; Mature: 9.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYRSRFKILAAVAALAATLVLPAHAQEKIKFKAIGQPLATGLIQKNKEQPFFENFAAKT CCHHHHHHHHHHHHHHHHHHHCCCCHHHHEEHHHCCCHHHHHHHHCCCCCCHHHHHHHCC GLPIEVDYKPIDTLGIKDTEQLRVMKAGLFDIVSLRVSQNSRDEPTILGLDLVGASPDYA CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEEEECCCCCCH TGRKVAKAYFDTVDARLQQQFNVKLLGVWPFGPQILFCKKPIAKLADIKGMKVRVYDQNL HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCHHHHHHCCCCCEEEEEHHHH AKFIELVGGTPVPVSFADTHQSLSLGVVDCAITGPSSANSAGWPEVTTHQLPLGFQMALN HHHHHHHCCCCCCEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEC GYAISLKAWNQLKPDQQVKLKAAFDKLTDEIWTYSEELFQDALNCNAGKDPCTTGKKFKL CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE VNVAVTPADGELVRSAVTKVSLPTWAEVCDKSNPGCSQKWHAQVAPVLGLK EEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHCHHCCCC >Mature Secondary Structure SYRSRFKILAAVAALAATLVLPAHAQEKIKFKAIGQPLATGLIQKNKEQPFFENFAAKT CHHHHHHHHHHHHHHHHHHHCCCCHHHHEEHHHCCCHHHHHHHHCCCCCCHHHHHHHCC GLPIEVDYKPIDTLGIKDTEQLRVMKAGLFDIVSLRVSQNSRDEPTILGLDLVGASPDYA CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEEEECCCCCCH TGRKVAKAYFDTVDARLQQQFNVKLLGVWPFGPQILFCKKPIAKLADIKGMKVRVYDQNL HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCHHHHHHCCCCCEEEEEHHHH AKFIELVGGTPVPVSFADTHQSLSLGVVDCAITGPSSANSAGWPEVTTHQLPLGFQMALN HHHHHHHCCCCCCEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEC GYAISLKAWNQLKPDQQVKLKAAFDKLTDEIWTYSEELFQDALNCNAGKDPCTTGKKFKL CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE VNVAVTPADGELVRSAVTKVSLPTWAEVCDKSNPGCSQKWHAQVAPVLGLK EEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA