| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is thiO [H]
Identifier: 91785951
GI number: 91785951
Start: 41740
End: 42801
Strand: Direct
Name: thiO [H]
Synonym: Bpro_0038
Alternate gene names: 91785951
Gene position: 41740-42801 (Clockwise)
Preceding gene: 91785950
Following gene: 91785953
Centisome position: 0.8
GC content: 70.34
Gene sequence:
>1062_bases ATGAGCACTCCTCACATCGGTATCGCAGGCGCAGGCCTGGCCGGCCGCACGCTGGCCTGGCGCCTGTTGCGCGCCGGCTG CCGCGTGAGCCTGTTCGACGCGCGCCTGCGCGATGACCAGGCCACCGCGTCCATGACGGCGGCGGCCATGCTCTCTCCGC TGGCCGAGCTGGCGGTGTCGGACGAGGTGGTGTTTGCGCTGGGCCAGCGCTCCATGCAGCTGTGGCCGCGCTGGATCGCG GAGCTGGCGGCCACGGGCGCACCGCCGGTGTATTTCCGCCAGCAGGGCACGCTGGTGGTGGCGCACGCACCCGACCAGGC CTCGCTGGAACACTTCACGCGCCTGCTGCATCACAAGCTGCCCGAGGCCTGCCGCGCGCAGGTGCACACGCTCGACAGTG CGTCGCTCGCGCAGTACGAGCCGGCGCTGGCCGGGCGTTTTGGCGGCGGCCTGTTTCTGGAAAGCGAGGGCCAGCTGGCC AATGACCAGCTGATGGCGGCGCTGGCGGCGCAGATCGATGCGCTGGGCTGCCACTGGCATGAAGGGCAGCGGGTGGACCG CCTGGCGCCGCATTTCATCAGCTGCGCCGGCGCCAACTACACCGTCGATGTGGCGGTGGATGCCCGCGGCGTGGGCAGCC AGGCGGCATGGCCGCAATTGCGCGGCGTGCGTGGCGAGGTGCTCACGGTGGAATGCCCGGGCGTGACGCTGCAGCGCCCG GTGCGCCTGATGCATCCGCGCTACCAGCTTTATGTGGCACCGCGCCCCGATCACCGTTTTGTGGTGGGCGCGACCGAGCT GGAGTCGGAAGACACCGGCGCCATGACCTTGCGCTCCATGCTGGAACTGGGCAGCGCCCTGCACAGCCTGCACCCGGCCT TTGGCGAGGCGCGTGTGGTGCGGCTGGCGGCGGCATTGCGGCCGGCTCTGGACGACCATCGCCCGGCGGTGGCCTTGCGC GACGGTGTCTGGCATATCAACGGCCTGTACCGGCATGGCTATCTGTGTGCGCCTGCGCTGGTGGAGGAACTGGTCCATCA ACTGCTGGAGAGCCCGGCATGA
Upstream 100 bases:
>100_bases GGGCCCGAAATTAAATGAAGTTGTTTCTTTTCATGTGCCGTCGGCCCTCACCCCCGCCCTCTCCCGGCAGGAGAGGGAGT AAGGCAGAAATACTTTCACT
Downstream 100 bases:
>100_bases CGGTTATGAACTCTCTTGAAATTTCGCTGAACGGCAAACGCGTGGCCACCGAGGCGCCCACGCTGCAGGCGCTGCTGCTG GCGCAGGGCTACCCGCTGCA
Product: FAD dependent oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 353; Mature: 352
Protein sequence:
>353_residues MSTPHIGIAGAGLAGRTLAWRLLRAGCRVSLFDARLRDDQATASMTAAAMLSPLAELAVSDEVVFALGQRSMQLWPRWIA ELAATGAPPVYFRQQGTLVVAHAPDQASLEHFTRLLHHKLPEACRAQVHTLDSASLAQYEPALAGRFGGGLFLESEGQLA NDQLMAALAAQIDALGCHWHEGQRVDRLAPHFISCAGANYTVDVAVDARGVGSQAAWPQLRGVRGEVLTVECPGVTLQRP VRLMHPRYQLYVAPRPDHRFVVGATELESEDTGAMTLRSMLELGSALHSLHPAFGEARVVRLAAALRPALDDHRPAVALR DGVWHINGLYRHGYLCAPALVEELVHQLLESPA
Sequences:
>Translated_353_residues MSTPHIGIAGAGLAGRTLAWRLLRAGCRVSLFDARLRDDQATASMTAAAMLSPLAELAVSDEVVFALGQRSMQLWPRWIA ELAATGAPPVYFRQQGTLVVAHAPDQASLEHFTRLLHHKLPEACRAQVHTLDSASLAQYEPALAGRFGGGLFLESEGQLA NDQLMAALAAQIDALGCHWHEGQRVDRLAPHFISCAGANYTVDVAVDARGVGSQAAWPQLRGVRGEVLTVECPGVTLQRP VRLMHPRYQLYVAPRPDHRFVVGATELESEDTGAMTLRSMLELGSALHSLHPAFGEARVVRLAAALRPALDDHRPAVALR DGVWHINGLYRHGYLCAPALVEELVHQLLESPA >Mature_352_residues STPHIGIAGAGLAGRTLAWRLLRAGCRVSLFDARLRDDQATASMTAAAMLSPLAELAVSDEVVFALGQRSMQLWPRWIAE LAATGAPPVYFRQQGTLVVAHAPDQASLEHFTRLLHHKLPEACRAQVHTLDSASLAQYEPALAGRFGGGLFLESEGQLAN DQLMAALAAQIDALGCHWHEGQRVDRLAPHFISCAGANYTVDVAVDARGVGSQAAWPQLRGVRGEVLTVECPGVTLQRPV RLMHPRYQLYVAPRPDHRFVVGATELESEDTGAMTLRSMLELGSALHSLHPAFGEARVVRLAAALRPALDDHRPAVALRD GVWHINGLYRHGYLCAPALVEELVHQLLESPA
Specific function: May have amino acid oxidase activity in the biosynthesis of thiazole when cysteine gives its thiol group to be inserted into the thiazole molecule and the rest of the molecule is deaminated to give pyruvic acid and ammonia [H]
COG id: COG0665
COG function: function code E; Glycine/D-amino acid oxidases (deaminating)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006076 - InterPro: IPR012727 [H]
Pfam domain/function: PF01266 DAO [H]
EC number: NA
Molecular weight: Translated: 38207; Mature: 38076
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPHIGIAGAGLAGRTLAWRLLRAGCRVSLFDARLRDDQATASMTAAAMLSPLAELAVS CCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHC DEVVFALGQRSMQLWPRWIAELAATGAPPVYFRQQGTLVVAHAPDQASLEHFTRLLHHKL CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHC PEACRAQVHTLDSASLAQYEPALAGRFGGGLFLESEGQLANDQLMAALAAQIDALGCHWH CHHHHHHHHCCCCCHHHHCCHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCC EGQRVDRLAPHFISCAGANYTVDVAVDARGVGSQAAWPQLRGVRGEVLTVECPGVTLQRP CCCCHHHHCCHHHHCCCCCEEEEEEEECCCCCCCCCCHHHCCCCCCEEEEECCCCCHHCC VRLMHPRYQLYVAPRPDHRFVVGATELESEDTGAMTLRSMLELGSALHSLHPAFGEARVV HHHHCCCEEEEEECCCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH RLAAALRPALDDHRPAVALRDGVWHINGLYRHGYLCAPALVEELVHQLLESPA HHHHHHHHHHCCCCCEEEEECCEEEECCHHHCCEEEHHHHHHHHHHHHHHCCC >Mature Secondary Structure STPHIGIAGAGLAGRTLAWRLLRAGCRVSLFDARLRDDQATASMTAAAMLSPLAELAVS CCCCCEEECCCCCHHHHHHHHHHCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHC DEVVFALGQRSMQLWPRWIAELAATGAPPVYFRQQGTLVVAHAPDQASLEHFTRLLHHKL CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHC PEACRAQVHTLDSASLAQYEPALAGRFGGGLFLESEGQLANDQLMAALAAQIDALGCHWH CHHHHHHHHCCCCCHHHHCCHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCC EGQRVDRLAPHFISCAGANYTVDVAVDARGVGSQAAWPQLRGVRGEVLTVECPGVTLQRP CCCCHHHHCCHHHHCCCCCEEEEEEEECCCCCCCCCCHHHCCCCCCEEEEECCCCCHHCC VRLMHPRYQLYVAPRPDHRFVVGATELESEDTGAMTLRSMLELGSALHSLHPAFGEARVV HHHHCCCEEEEEECCCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH RLAAALRPALDDHRPAVALRDGVWHINGLYRHGYLCAPALVEELVHQLLESPA HHHHHHHHHHCCCCCEEEEECCEEEECCHHHCCEEEHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9371431 [H]