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The map label for this gene is cydA [H]

Identifier: 89898148

GI number: 89898148

Start: 399892

End: 401232

Strand: Direct

Name: cydA [H]

Synonym: CF0341

Alternate gene names: 89898148

Gene position: 399892-401232 (Clockwise)

Preceding gene: 89898143

Following gene: 89898149

Centisome position: 34.29

GC content: 39.6

Gene sequence:

>1341_bases
ATGGATACGGTGATTTTATCTAGAATACAGTTTGGTTTATTTATTGCGTTTCACTATTTGTTTGTTCCTTTAAGTATGGG
CCTTAGCATGATGCTTATTTTAATGGAGGGCTTGTATCTAGTTACGAAGAAGAATATTTATAAACAACTAACCTGGTTTT
GGATTGGCGTATTTGCGTTAACATTTGTGATTGGCGTGGTTACTGGAATCATGCAGATTTTTTCTTTTGGATCTAATTGG
TCGAGGTTTTCTGAGTATACAGGGAACGTTTTCGGCACCCTGTTAGGAAGTGAAGGTGTGTTTGCTTTTTTCCTAGAATC
AGGATTTTTAGGCGTGTTGTTATTCGGACGTCATAAAGTTTCTAAGAAAATACATTTCTTCTCTACGTGTATGGTGGCTG
TGGGAGCTCATATGAGCGCTTTTTGGATAGTATGTGCCAATTCTTGGATGCAAACGCCGTCTGGTTATGAACTGGCCATA
CATAATGGTCAACTTGTTCCTATCATGACTTCATTTTGGAAGGTAGTTTTCTCTCCCTCAAGTATGGATCGCTATACTCA
TGTGGTCTTGGGAGCTTGGCTATCGGGTATTTTCCTGGTTATTAGTGTAAGTGCGTATTATTTACGTAAACAACGTTATA
TAGAATTTGCTCGTCAGGGATTGAAGTTAGGCGCGATTACCGGAATTCTTGTGCTTATATTACAATTGTGGTCCGCCGAT
GTTACTGCGCGTGGTGTTGCTAAGCATCAACCTGCAAAATTAGCTGCTTTTGAAGGTCTGTTTAAAACCCAAGAGTATAG
TCCGATTTACCTATTCGGTTATGTTGATGTAGAGAATCAAAAGGTGATAGGCTTACCTCTTCCTGGAGGTCTTTCCTTTT
TAGTTCATAGAAATACTAAAACTCCGGTTGCAGGTCTTGATCAAACTCCTCAAGATGAGTGGCCTAAAGTGCAGATGGTT
TTTCAGTTTTATCATCTTATGGTTATGCTTTGGGGGCTTATGGTACTTTTAGTAATCATCACATGGTTTGCCTATAAGAA
AAGACGCTGGGCATTAAAACCTTTCATCTTAACTATGCTATCCTTCTCTGTCCTCTGCCCCGAAATATGTAATGAGGTGG
GTTGGTTCGCTGCGGAGATGGGAAGACAGCCTTGGGTTGTTTATGGCCTATTAAAAACCAATGATGCTGCTTCTCCTATC
GTGAGCGGAGAGCAGGTAGCCCAATCTCTGATTTTATTTAGTCTAGTGTTTGTTTGTCTCTTATCTTTATTCCTCTTTCT
TTTATGGAAAAAAATACAACGAGGACCAGATCAAAACGATCTTAATGAGGTGGAAGTATAA

Upstream 100 bases:

>100_bases
AGAGAAAAAGGTTAACAGCAAAGTATTTTGTAGTTGCAATAGTTTGTTATATACTTCACATTACAACTTTTTTATTTGTT
CTCGGATTTCTGGCGGACAT

Downstream 100 bases:

>100_bases
TCATGGAATTTTCATTAGCTTCAATGTTACCGATAGCTTGGTATGCTATACTAGTAGTTGCGGTATTCGCTTATTCTTTG
GGGGATGGTTTTGATTTAGG

Product: cytochrome D ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MDTVILSRIQFGLFIAFHYLFVPLSMGLSMMLILMEGLYLVTKKNIYKQLTWFWIGVFALTFVIGVVTGIMQIFSFGSNW
SRFSEYTGNVFGTLLGSEGVFAFFLESGFLGVLLFGRHKVSKKIHFFSTCMVAVGAHMSAFWIVCANSWMQTPSGYELAI
HNGQLVPIMTSFWKVVFSPSSMDRYTHVVLGAWLSGIFLVISVSAYYLRKQRYIEFARQGLKLGAITGILVLILQLWSAD
VTARGVAKHQPAKLAAFEGLFKTQEYSPIYLFGYVDVENQKVIGLPLPGGLSFLVHRNTKTPVAGLDQTPQDEWPKVQMV
FQFYHLMVMLWGLMVLLVIITWFAYKKRRWALKPFILTMLSFSVLCPEICNEVGWFAAEMGRQPWVVYGLLKTNDAASPI
VSGEQVAQSLILFSLVFVCLLSLFLFLLWKKIQRGPDQNDLNEVEV

Sequences:

>Translated_446_residues
MDTVILSRIQFGLFIAFHYLFVPLSMGLSMMLILMEGLYLVTKKNIYKQLTWFWIGVFALTFVIGVVTGIMQIFSFGSNW
SRFSEYTGNVFGTLLGSEGVFAFFLESGFLGVLLFGRHKVSKKIHFFSTCMVAVGAHMSAFWIVCANSWMQTPSGYELAI
HNGQLVPIMTSFWKVVFSPSSMDRYTHVVLGAWLSGIFLVISVSAYYLRKQRYIEFARQGLKLGAITGILVLILQLWSAD
VTARGVAKHQPAKLAAFEGLFKTQEYSPIYLFGYVDVENQKVIGLPLPGGLSFLVHRNTKTPVAGLDQTPQDEWPKVQMV
FQFYHLMVMLWGLMVLLVIITWFAYKKRRWALKPFILTMLSFSVLCPEICNEVGWFAAEMGRQPWVVYGLLKTNDAASPI
VSGEQVAQSLILFSLVFVCLLSLFLFLLWKKIQRGPDQNDLNEVEV
>Mature_446_residues
MDTVILSRIQFGLFIAFHYLFVPLSMGLSMMLILMEGLYLVTKKNIYKQLTWFWIGVFALTFVIGVVTGIMQIFSFGSNW
SRFSEYTGNVFGTLLGSEGVFAFFLESGFLGVLLFGRHKVSKKIHFFSTCMVAVGAHMSAFWIVCANSWMQTPSGYELAI
HNGQLVPIMTSFWKVVFSPSSMDRYTHVVLGAWLSGIFLVISVSAYYLRKQRYIEFARQGLKLGAITGILVLILQLWSAD
VTARGVAKHQPAKLAAFEGLFKTQEYSPIYLFGYVDVENQKVIGLPLPGGLSFLVHRNTKTPVAGLDQTPQDEWPKVQMV
FQFYHLMVMLWGLMVLLVIITWFAYKKRRWALKPFILTMLSFSVLCPEICNEVGWFAAEMGRQPWVVYGLLKTNDAASPI
VSGEQVAQSLILFSLVFVCLLSLFLFLLWKKIQRGPDQNDLNEVEV

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=319, Percent_Identity=37.6175548589342, Blast_Score=229, Evalue=4e-61,
Organism=Escherichia coli, GI87081779, Length=332, Percent_Identity=34.3373493975904, Blast_Score=212, Evalue=4e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 50541; Mature: 50541

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]