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The map label for this gene is cydB [H]

Identifier: 89898149

GI number: 89898149

Start: 401235

End: 402296

Strand: Direct

Name: cydB [H]

Synonym: CF0342

Alternate gene names: 89898149

Gene position: 401235-402296 (Clockwise)

Preceding gene: 89898148

Following gene: 89898152

Centisome position: 34.4

GC content: 38.51

Gene sequence:

>1062_bases
ATGGAATTTTCATTAGCTTCAATGTTACCGATAGCTTGGTATGCTATACTAGTAGTTGCGGTATTCGCTTATTCTTTGGG
GGATGGTTTTGATTTAGGTTTGAGTACAATCTATTTCATATCTCGGGCGGATGAAGAACGACGCGTCTTACTTAATTCCA
TAGGACCTGTTTGGGATGGTAATGAGGTTTGGCTCATTATTATTTTTGGCGGACTTTTTGCAGGATTTCCCTCTGCCTAT
GGCGCATTATTGTCCATTTTTTACATGCCAATATGGACCCTAGTTTTACTCTATATCTTTAGGGGATGTTCTTTAGAGTT
TCGCAGTAAAGCGGAATCTACGAAATGGAAAGCTTTTTGGGATGTTGTTTTCTGTGTATCAGGTATCGCTATTAGTTTCT
TCCTAGGAGCTATAGTAGGGAATATGATTTTAGGATTGCCTATGTCTCCAACGACACAATATTCCTCGCTATCTTGGCTA
CTATTTTTCCGTCCCTATGCATTCTTGTGTGGGGCTCTTGTTGTCAGTGCTTTTTCTATTCATGGAGCAACGTTTACTTT
AATGAAAACTTCCGGGGAATTGCATCATCGTATTGTTAAACGTTTTTCTTATGTTTTATCGGCCTTTTTAGTTATTTATC
TTCTTTTAATCGGTACTACTTTGGTTATGATACCACAAACCAAAGGGTATTCTTTCCCCATAGGGAGTTTTATTGGCGTC
CCTACATACCCAGTATTGATATTACTATTGGCTATGACTTTGGCCTGTAGTTTAGCGACAAAAACTTGCATATCTAAACA
GCGTTACGGTTGTGCTTTTCTCTACTCTTCGTGCAATTTACTCCTGTTGATACTATCCTCAGTAGCTTTGGTTTTCCCAA
ATCTCTTATTTTCTACGGTAAGCTCAGAGTACAGCTATACGATTTATAATGCAGCAGCTAGTATGAAAACTTTACAGAGC
CTTTTAGTGATTGTACTTGTTGGCCTGCCATTTATCATTGCCTATGGCGTGTATATTTATCGTGTGTTCAAAGGTAAAAC
AGATTTCCCTTCGGTGTATTAG

Upstream 100 bases:

>100_bases
TAGTGTTTGTTTGTCTCTTATCTTTATTCCTCTTTCTTTTATGGAAAAAAATACAACGAGGACCAGATCAAAACGATCTT
AATGAGGTGGAAGTATAATC

Downstream 100 bases:

>100_bases
AGTAGCCCAAGGGGTTTGTTGGTGACAATAAGCTCATAAACTCTATGAGAACGGTAATTGCCTAAAGGGGATTTCTACAA
TTGTAGAAATCTCTGAAAGG

Product: cytochrome D oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-II oxidase subunit II [H]

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MEFSLASMLPIAWYAILVVAVFAYSLGDGFDLGLSTIYFISRADEERRVLLNSIGPVWDGNEVWLIIIFGGLFAGFPSAY
GALLSIFYMPIWTLVLLYIFRGCSLEFRSKAESTKWKAFWDVVFCVSGIAISFFLGAIVGNMILGLPMSPTTQYSSLSWL
LFFRPYAFLCGALVVSAFSIHGATFTLMKTSGELHHRIVKRFSYVLSAFLVIYLLLIGTTLVMIPQTKGYSFPIGSFIGV
PTYPVLILLLAMTLACSLATKTCISKQRYGCAFLYSSCNLLLLILSSVALVFPNLLFSTVSSEYSYTIYNAAASMKTLQS
LLVIVLVGLPFIIAYGVYIYRVFKGKTDFPSVY

Sequences:

>Translated_353_residues
MEFSLASMLPIAWYAILVVAVFAYSLGDGFDLGLSTIYFISRADEERRVLLNSIGPVWDGNEVWLIIIFGGLFAGFPSAY
GALLSIFYMPIWTLVLLYIFRGCSLEFRSKAESTKWKAFWDVVFCVSGIAISFFLGAIVGNMILGLPMSPTTQYSSLSWL
LFFRPYAFLCGALVVSAFSIHGATFTLMKTSGELHHRIVKRFSYVLSAFLVIYLLLIGTTLVMIPQTKGYSFPIGSFIGV
PTYPVLILLLAMTLACSLATKTCISKQRYGCAFLYSSCNLLLLILSSVALVFPNLLFSTVSSEYSYTIYNAAASMKTLQS
LLVIVLVGLPFIIAYGVYIYRVFKGKTDFPSVY
>Mature_353_residues
MEFSLASMLPIAWYAILVVAVFAYSLGDGFDLGLSTIYFISRADEERRVLLNSIGPVWDGNEVWLIIIFGGLFAGFPSAY
GALLSIFYMPIWTLVLLYIFRGCSLEFRSKAESTKWKAFWDVVFCVSGIAISFFLGAIVGNMILGLPMSPTTQYSSLSWL
LFFRPYAFLCGALVVSAFSIHGATFTLMKTSGELHHRIVKRFSYVLSAFLVIYLLLIGTTLVMIPQTKGYSFPIGSFIGV
PTYPVLILLLAMTLACSLATKTCISKQRYGCAFLYSSCNLLLLILSSVALVFPNLLFSTVSSEYSYTIYNAAASMKTLQS
LLVIVLVGLPFIIAYGVYIYRVFKGKTDFPSVY

Specific function: Cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli CydB [H]

Homologues:

Organism=Escherichia coli, GI1787213, Length=355, Percent_Identity=29.5774647887324, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1786954, Length=355, Percent_Identity=28.169014084507, Blast_Score=149, Evalue=4e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 39126; Mature: 39126

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFSLASMLPIAWYAILVVAVFAYSLGDGFDLGLSTIYFISRADEERRVLLNSIGPVWDG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
NEVWLIIIFGGLFAGFPSAYGALLSIFYMPIWTLVLLYIFRGCSLEFRSKAESTKWKAFW
CCEEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHH
DVVFCVSGIAISFFLGAIVGNMILGLPMSPTTQYSSLSWLLFFRPYAFLCGALVVSAFSI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGATFTLMKTSGELHHRIVKRFSYVLSAFLVIYLLLIGTTLVMIPQTKGYSFPIGSFIGV
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCC
PTYPVLILLLAMTLACSLATKTCISKQRYGCAFLYSSCNLLLLILSSVALVFPNLLFSTV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSEYSYTIYNAAASMKTLQSLLVIVLVGLPFIIAYGVYIYRVFKGKTDFPSVY
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MEFSLASMLPIAWYAILVVAVFAYSLGDGFDLGLSTIYFISRADEERRVLLNSIGPVWDG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
NEVWLIIIFGGLFAGFPSAYGALLSIFYMPIWTLVLLYIFRGCSLEFRSKAESTKWKAFW
CCEEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHH
DVVFCVSGIAISFFLGAIVGNMILGLPMSPTTQYSSLSWLLFFRPYAFLCGALVVSAFSI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGATFTLMKTSGELHHRIVKRFSYVLSAFLVIYLLLIGTTLVMIPQTKGYSFPIGSFIGV
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCC
PTYPVLILLLAMTLACSLATKTCISKQRYGCAFLYSSCNLLLLILSSVALVFPNLLFSTV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SSEYSYTIYNAAASMKTLQSLLVIVLVGLPFIIAYGVYIYRVFKGKTDFPSVY
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658595; 8905232; 9278503; 8626304 [H]