| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89056650
Identifier: 89056650
GI number: 89056650
Start: 4270276
End: 4270623
Strand: Direct
Name: 89056650
Synonym: Jann_4159
Alternate gene names: NA
Gene position: 4270276-4270623 (Clockwise)
Preceding gene: 89056649
Following gene: 89056652
Centisome position: 98.9
GC content: 65.52
Gene sequence:
>348_bases ATGAGCGACCAGAGGTTCATCATCGAAATGGGCATGGGCAATGACCAATACGGCCAAGACTATACCAAGGCCGCAGCCCG CGCGATTGAGGACGCTATCCGCCATTCGGCCATCCCGATGTTCGAGGCGACGGGCCTGACCCACGATCAGATGCGCGTGC AGGTCACGATCGGCGTGCAGGACCCCGATGCGGTGGACTGCGCCGCGTTGGCGGACGCGTTGCCCCGGGGCCGCGCGACG GTGACGGCCGTTCACGGCGGCCTGGACGTGACCAACCCTGACACCGGCAAAACACTCGTCATTGCCTCTGCCGCCGTGGA AGCCTTCTTGCCACGCCAGCCGGGCTAG
Upstream 100 bases:
>100_bases CGCGAAATGGCGGGCTCGATGTGCCGCGCACCGACGGCGGCAATCCGACGGTTATTGCCAATGTTGCCATCTCGGTGGCC CTCGACCTGGAGCACGCACA
Downstream 100 bases:
>100_bases GCCTCCGCCAACGCTTTCATAAATCCGCGGGCCGCGCTGGTGGCGATGTCATCGGAGCGGGTCATGATCCCCACGGCCCC TGCCGTTTGCTCAAGCGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 115; Mature: 114
Protein sequence:
>115_residues MSDQRFIIEMGMGNDQYGQDYTKAAARAIEDAIRHSAIPMFEATGLTHDQMRVQVTIGVQDPDAVDCAALADALPRGRAT VTAVHGGLDVTNPDTGKTLVIASAAVEAFLPRQPG
Sequences:
>Translated_115_residues MSDQRFIIEMGMGNDQYGQDYTKAAARAIEDAIRHSAIPMFEATGLTHDQMRVQVTIGVQDPDAVDCAALADALPRGRAT VTAVHGGLDVTNPDTGKTLVIASAAVEAFLPRQPG >Mature_114_residues SDQRFIIEMGMGNDQYGQDYTKAAARAIEDAIRHSAIPMFEATGLTHDQMRVQVTIGVQDPDAVDCAALADALPRGRATV TAVHGGLDVTNPDTGKTLVIASAAVEAFLPRQPG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12181; Mature: 12050
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDQRFIIEMGMGNDQYGQDYTKAAARAIEDAIRHSAIPMFEATGLTHDQMRVQVTIGVQ CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEEEECC DPDAVDCAALADALPRGRATVTAVHGGLDVTNPDTGKTLVIASAAVEAFLPRQPG CCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEEEHHHHHHHCCCCCC >Mature Secondary Structure SDQRFIIEMGMGNDQYGQDYTKAAARAIEDAIRHSAIPMFEATGLTHDQMRVQVTIGVQ CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEEEECC DPDAVDCAALADALPRGRATVTAVHGGLDVTNPDTGKTLVIASAAVEAFLPRQPG CCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEEEHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA