| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89056109
Identifier: 89056109
GI number: 89056109
Start: 3690928
End: 3691344
Strand: Direct
Name: 89056109
Synonym: Jann_3618
Alternate gene names: NA
Gene position: 3690928-3691344 (Clockwise)
Preceding gene: 89056105
Following gene: 89056111
Centisome position: 85.48
GC content: 60.91
Gene sequence:
>417_bases ATGTCCGATCACAGTTTCACCCCCGAAGACAGCCTCGTGGCCGTGATGGTTGGGATGTCCGTATCCGATGAGACGATCCG CACCGAGGAGTTGCTGTCCATTGAGCAGATGGTGAACTACCTGCCCGTGTTCGGCGGATATGACATTGACCGGATGCGAC GGGTGGCCAGCACGGTGCTGGAGCTTTTTGAGGTTGAGGACGGGTTGGACGCGTTCTTTGGCCTGGTGAAGGCGGATCTG CCCGCGCACCTCTTTGAAACGGCCTATGCCCTGGCCTGCGATGTCGCCGCTGCCGATGGCAAATTGGCCCAGGCGGAACT GCGGTTCTTGCAGGAGCTACGCGATGAACTTGAGATCGACCGCCTCCATGCCAGCGCCATTGAACGCGGGGCGCGGGCGC GGCATCAGACGGTTTGA
Upstream 100 bases:
>100_bases AAACGGGGCCAAATTGCCCAAAAGTTAATCCAGGGCCACGCCCTATTGTCTGGGACGCTCCTCGTCAATAAATGACACCC CAGCACAGGAGAGTTGGCAA
Downstream 100 bases:
>100_bases CGGGTTAGCAGCGCCAGACTTTCGTCCACAAAGGCCCTCTCTTCGCGGGTCAGAATAGTTGCCCGGGGATAGATCGGATT TGAACGGTCGTTTCGGATCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 138; Mature: 137
Protein sequence:
>138_residues MSDHSFTPEDSLVAVMVGMSVSDETIRTEELLSIEQMVNYLPVFGGYDIDRMRRVASTVLELFEVEDGLDAFFGLVKADL PAHLFETAYALACDVAAADGKLAQAELRFLQELRDELEIDRLHASAIERGARARHQTV
Sequences:
>Translated_138_residues MSDHSFTPEDSLVAVMVGMSVSDETIRTEELLSIEQMVNYLPVFGGYDIDRMRRVASTVLELFEVEDGLDAFFGLVKADL PAHLFETAYALACDVAAADGKLAQAELRFLQELRDELEIDRLHASAIERGARARHQTV >Mature_137_residues SDHSFTPEDSLVAVMVGMSVSDETIRTEELLSIEQMVNYLPVFGGYDIDRMRRVASTVLELFEVEDGLDAFFGLVKADLP AHLFETAYALACDVAAADGKLAQAELRFLQELRDELEIDRLHASAIERGARARHQTV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15361; Mature: 15229
Theoretical pI: Translated: 4.23; Mature: 4.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDHSFTPEDSLVAVMVGMSVSDETIRTEELLSIEQMVNYLPVFGGYDIDRMRRVASTVL CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH ELFEVEDGLDAFFGLVKADLPAHLFETAYALACDVAAADGKLAQAELRFLQELRDELEID HHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH RLHASAIERGARARHQTV HHHHHHHHHHHHHHCCCC >Mature Secondary Structure SDHSFTPEDSLVAVMVGMSVSDETIRTEELLSIEQMVNYLPVFGGYDIDRMRRVASTVL CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH ELFEVEDGLDAFFGLVKADLPAHLFETAYALACDVAAADGKLAQAELRFLQELRDELEID HHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH RLHASAIERGARARHQTV HHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA