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The map label for this gene is yiaN [C]

Identifier: 89056010

GI number: 89056010

Start: 3575739

End: 3577184

Strand: Direct

Name: yiaN [C]

Synonym: Jann_3519

Alternate gene names: 89056010

Gene position: 3575739-3577184 (Clockwise)

Preceding gene: 89056009

Following gene: 89056011

Centisome position: 82.81

GC content: 61.96

Gene sequence:

>1446_bases
ATGGAACCCATTACAATTGGCCTCTACGTCACCGGTGGTTTGCTGCTGTTTGTTATTCTTGGCATGCGCGTGGCCTTTGC
GGCGGGTATGGCAGGCTTGATCGGGCTCATCTGGATCTTCTGGATGCGCCGCGATTATGGCGCGGACGATCTGGGATGGG
CCGTCGGCGTCGCGGTGCAGACGGCAGGGCAAGTCCCCCACGCCAAGGTCGCCAGCCAGGCGTTATCCCTGATCCCAACG
TTCATTCTGATAGGTTACATGGCCTATTATGCAGGGCTGACGAAGGCACTGTTCGAGGCCGCCAAGCGCTGGATCGCCTG
GGTGCCCGGCGGCCTGGCCGTCTCCACCGTCTTCGCCACCGCTGGCTTTGCCGCCGTGTCCGGCGCATCGGTCGCGACCT
CCGCCGTCTTTGCCCGCATCGCCATCCCTGAAATGCTCAAGATCGGCTACGACAAACGCTTTGCCGCAGGCGTTGTGGCG
GCGGGCGGCACGTTGGCCTCCCTCATCCCGCCCTCGGCCATCCTGGTGATCTATGCCATCATCGTGGAGCAGGACGTGGG
CATGTTGCTGCTGGCGGGCTTCATCCCCGGGGCGTTCTCGGCCCTCATCTACGCGCTGATCATCATTGGCCTTGCGCTGA
CGATCAAGAACTTCGGCCCTCCGGTCAAAGGCTTCACCTGGGGCCAGCGGTTCAGCGCGTTGTTGCCGGCCCTGCCCATT
GTCGCCGTCGTCGTGATTATCCTCTTCTTCGTGTACAACCCGATCCCCGCAGAGGCGACGATCGCGGGCCGCACCATCAA
CATCCCCTTCGGCGGCGACAGCTGGGGCACACCGACCGAGGGCGGGGCCATCGGTGCCTTCATCGTTTTCCTCATGGCAC
TGTTTCGCGGCATGCGCTGGCCCGAGTTTCGCGACGCGTTGATTGAGACCGCGAAGCTCAGCGTGATGATCTTCACCATC
ATCTGGGGCGTCCTGATTTACGTGCGGTTCCTGGGCTTTGCGGAACTTCCCGCCGCCTTCGCGGATTGGATCACCAGCCT
GACCGTCTCACCCATGCTGATCCTGGTCTGCATCCTTCTGGCCTATGCGGTCCTGGGCATGTTCATGGACGCCATCGGGA
TGCTTCTGCTGACCCTGCCCGTCGTCTTCCCCGCCGTCATGGCACTGAATGGTGGCATCGACGTCTCGGCAGCCGACAGC
GCCTTCGGCATGTCGGGGCCCATGTGTGCAATTTGGTTCGGGATATTGGTGGTAAAAATGGCAGAGTTCTGTTTGATCAC
ACCGCCCATTGGCCTGAACTGCTTTGTGGTCGCAGGCGTGCGCGACGATCTGACAGTGCAGGACGTGTTCCGGGGCGTCA
CGCCCTTCTTCATTGCCGACGCGATCACCATCGCACTTCTGGTGACCTTCCCGTGGATCGTCCTGTGGCTCCCCAGTCAG
GTGTAA

Upstream 100 bases:

>100_bases
AGCGCCCCGTGGCCGTTCCACTTGTGGCCGATGTCGCCACCCAAGCCGCGATGGAGGCCAGGCAGGTCTCCGGTCGCGAC
GACGTTTGAGGGCCCGACCG

Downstream 100 bases:

>100_bases
TCGCTTGCCGCCACGGTTGGCGCGGCCTAAGCCGTGGGGCACAGTAAGGATCCTCCATGGCACAGCCTCAACACGACGAC
ACACCCGCAGGTTATGCCTA

Product: TRAP C4-dicarboxylate transport system permease DctM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MEPITIGLYVTGGLLLFVILGMRVAFAAGMAGLIGLIWIFWMRRDYGADDLGWAVGVAVQTAGQVPHAKVASQALSLIPT
FILIGYMAYYAGLTKALFEAAKRWIAWVPGGLAVSTVFATAGFAAVSGASVATSAVFARIAIPEMLKIGYDKRFAAGVVA
AGGTLASLIPPSAILVIYAIIVEQDVGMLLLAGFIPGAFSALIYALIIIGLALTIKNFGPPVKGFTWGQRFSALLPALPI
VAVVVIILFFVYNPIPAEATIAGRTINIPFGGDSWGTPTEGGAIGAFIVFLMALFRGMRWPEFRDALIETAKLSVMIFTI
IWGVLIYVRFLGFAELPAAFADWITSLTVSPMLILVCILLAYAVLGMFMDAIGMLLLTLPVVFPAVMALNGGIDVSAADS
AFGMSGPMCAIWFGILVVKMAEFCLITPPIGLNCFVVAGVRDDLTVQDVFRGVTPFFIADAITIALLVTFPWIVLWLPSQ
V

Sequences:

>Translated_481_residues
MEPITIGLYVTGGLLLFVILGMRVAFAAGMAGLIGLIWIFWMRRDYGADDLGWAVGVAVQTAGQVPHAKVASQALSLIPT
FILIGYMAYYAGLTKALFEAAKRWIAWVPGGLAVSTVFATAGFAAVSGASVATSAVFARIAIPEMLKIGYDKRFAAGVVA
AGGTLASLIPPSAILVIYAIIVEQDVGMLLLAGFIPGAFSALIYALIIIGLALTIKNFGPPVKGFTWGQRFSALLPALPI
VAVVVIILFFVYNPIPAEATIAGRTINIPFGGDSWGTPTEGGAIGAFIVFLMALFRGMRWPEFRDALIETAKLSVMIFTI
IWGVLIYVRFLGFAELPAAFADWITSLTVSPMLILVCILLAYAVLGMFMDAIGMLLLTLPVVFPAVMALNGGIDVSAADS
AFGMSGPMCAIWFGILVVKMAEFCLITPPIGLNCFVVAGVRDDLTVQDVFRGVTPFFIADAITIALLVTFPWIVLWLPSQ
V
>Mature_481_residues
MEPITIGLYVTGGLLLFVILGMRVAFAAGMAGLIGLIWIFWMRRDYGADDLGWAVGVAVQTAGQVPHAKVASQALSLIPT
FILIGYMAYYAGLTKALFEAAKRWIAWVPGGLAVSTVFATAGFAAVSGASVATSAVFARIAIPEMLKIGYDKRFAAGVVA
AGGTLASLIPPSAILVIYAIIVEQDVGMLLLAGFIPGAFSALIYALIIIGLALTIKNFGPPVKGFTWGQRFSALLPALPI
VAVVVIILFFVYNPIPAEATIAGRTINIPFGGDSWGTPTEGGAIGAFIVFLMALFRGMRWPEFRDALIETAKLSVMIFTI
IWGVLIYVRFLGFAELPAAFADWITSLTVSPMLILVCILLAYAVLGMFMDAIGMLLLTLPVVFPAVMALNGGIDVSAADS
AFGMSGPMCAIWFGILVVKMAEFCLITPPIGLNCFVVAGVRDDLTVQDVFRGVTPFFIADAITIALLVTFPWIVLWLPSQ
V

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=428, Percent_Identity=28.9719626168224, Blast_Score=95, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 51065; Mature: 51065

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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C
>Mature Secondary Structure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C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]