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The map label for this gene is rarD [H]

Identifier: 89056011

GI number: 89056011

Start: 3577241

End: 3578131

Strand: Direct

Name: rarD [H]

Synonym: Jann_3520

Alternate gene names: 89056011

Gene position: 3577241-3578131 (Clockwise)

Preceding gene: 89056010

Following gene: 89056012

Centisome position: 82.85

GC content: 61.62

Gene sequence:

>891_bases
ATGGCACAGCCTCAACACGACGACACACCCGCAGGTTATGCCTATGCGGTCAGCGCCTATGTGCTTTGGGGCGGGTTGCC
GATCTACCTCAAGGCCTTGTCTCATATCCCGGCCCCTGAAATCGTCGCCCATCGCGTGATCTGGTCGCTGCCGATCATTG
GCTTGCTGATCTGGATCACTGGCCGCACGGCGGACCTGAAGGTTGCGCTGCGCAGCCCACGATTGCTGGCTATGGCAGCG
GTCACGGCGCTCTTCATTTCGGTGAACTGGGGTGTCTACATCTGGGCCATTGCGAACGACCGTGCGTTGGACGGGGCGCT
CGGCTATTACATCAACCCGCTTTTCAGCGTCTTCCTTGGCGCGGTCCTTCTGGGAGAGAGCCTGAGCCGTCTGCAATGGT
CTGCCGTCGCGCTTGCGGCGCTGGCGGTCATCGTCCTGACCGTTGAGGAAGGCCGCCTCCCCTGGGTGGCGCTGGCCCTG
ATGCTCAGCTGGGGCGGCTACGCGTTCTGCAAACGCAAGCTGCCCATCGGCCCGAACCAAGGCTTCTTTCTTGAGGTCGC
AATACTCTGCGTGCCCGCCCTGGCTTATGTGGCGTGGCTGGGGGCCACTGGCCAGGGCAGCTTCATGGCAGGCGTGCCCT
GGGACAGCTGGCTTCTGCTGGGATGCGGTTTGGTCACCGCCATCCCCCTGATCCTCTACGTCAACGGTGCCAAACTCCTG
CGGCTCAGCACCATCGGCATCCTGCAATACATCGCACCGACCCTGATATTCCTGGTGGCCGTGTTCCTGTTCAACGAACC
CTTCGGCACCGCACGCATGATCGCGTTTCCAATGATCTGGATTGCTCTCATCCTCTATTCCATCGCTCTGTTTCGCAGGT
CCCGCGCCTAA

Upstream 100 bases:

>100_bases
TGACCTTCCCGTGGATCGTCCTGTGGCTCCCCAGTCAGGTGTAATCGCTTGCCGCCACGGTTGGCGCGGCCTAAGCCGTG
GGGCACAGTAAGGATCCTCC

Downstream 100 bases:

>100_bases
GATTGTTTTGCGGAGCGCGGGTGGCCGTGGACGACATCATCATCATTCAGAATCGCCCTGGCCACGACGGAGCACCTGCA
GCTTTCTGGCATCCAGTGTG

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MAQPQHDDTPAGYAYAVSAYVLWGGLPIYLKALSHIPAPEIVAHRVIWSLPIIGLLIWITGRTADLKVALRSPRLLAMAA
VTALFISVNWGVYIWAIANDRALDGALGYYINPLFSVFLGAVLLGESLSRLQWSAVALAALAVIVLTVEEGRLPWVALAL
MLSWGGYAFCKRKLPIGPNQGFFLEVAILCVPALAYVAWLGATGQGSFMAGVPWDSWLLLGCGLVTAIPLILYVNGAKLL
RLSTIGILQYIAPTLIFLVAVFLFNEPFGTARMIAFPMIWIALILYSIALFRRSRA

Sequences:

>Translated_296_residues
MAQPQHDDTPAGYAYAVSAYVLWGGLPIYLKALSHIPAPEIVAHRVIWSLPIIGLLIWITGRTADLKVALRSPRLLAMAA
VTALFISVNWGVYIWAIANDRALDGALGYYINPLFSVFLGAVLLGESLSRLQWSAVALAALAVIVLTVEEGRLPWVALAL
MLSWGGYAFCKRKLPIGPNQGFFLEVAILCVPALAYVAWLGATGQGSFMAGVPWDSWLLLGCGLVTAIPLILYVNGAKLL
RLSTIGILQYIAPTLIFLVAVFLFNEPFGTARMIAFPMIWIALILYSIALFRRSRA
>Mature_295_residues
AQPQHDDTPAGYAYAVSAYVLWGGLPIYLKALSHIPAPEIVAHRVIWSLPIIGLLIWITGRTADLKVALRSPRLLAMAAV
TALFISVNWGVYIWAIANDRALDGALGYYINPLFSVFLGAVLLGESLSRLQWSAVALAALAVIVLTVEEGRLPWVALALM
LSWGGYAFCKRKLPIGPNQGFFLEVAILCVPALAYVAWLGATGQGSFMAGVPWDSWLLLGCGLVTAIPLILYVNGAKLLR
LSTIGILQYIAPTLIFLVAVFLFNEPFGTARMIAFPMIWIALILYSIALFRRSRA

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=292, Percent_Identity=37.6712328767123, Blast_Score=191, Evalue=4e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32199; Mature: 32068

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQPQHDDTPAGYAYAVSAYVLWGGLPIYLKALSHIPAPEIVAHRVIWSLPIIGLLIWIT
CCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
GRTADLKVALRSPRLLAMAAVTALFISVNWGVYIWAIANDRALDGALGYYINPLFSVFLG
CCCCEEEEEECCCHHHHHHHHHHHHHEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
AVLLGESLSRLQWSAVALAALAVIVLTVEEGRLPWVALALMLSWGGYAFCKRKLPIGPNQ
HHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCHHHEECCCCCCCCC
GFFLEVAILCVPALAYVAWLGATGQGSFMAGVPWDSWLLLGCGLVTAIPLILYVNGAKLL
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHEECCCHHH
RLSTIGILQYIAPTLIFLVAVFLFNEPFGTARMIAFPMIWIALILYSIALFRRSRA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AQPQHDDTPAGYAYAVSAYVLWGGLPIYLKALSHIPAPEIVAHRVIWSLPIIGLLIWIT
CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
GRTADLKVALRSPRLLAMAAVTALFISVNWGVYIWAIANDRALDGALGYYINPLFSVFLG
CCCCEEEEEECCCHHHHHHHHHHHHHEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
AVLLGESLSRLQWSAVALAALAVIVLTVEEGRLPWVALALMLSWGGYAFCKRKLPIGPNQ
HHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCHHHEECCCCCCCCC
GFFLEVAILCVPALAYVAWLGATGQGSFMAGVPWDSWLLLGCGLVTAIPLILYVNGAKLL
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHEECCCHHH
RLSTIGILQYIAPTLIFLVAVFLFNEPFGTARMIAFPMIWIALILYSIALFRRSRA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA