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The map label for this gene is soxB [H]

Identifier: 89055936

GI number: 89055936

Start: 3490672

End: 3491925

Strand: Direct

Name: soxB [H]

Synonym: Jann_3445

Alternate gene names: 89055936

Gene position: 3490672-3491925 (Clockwise)

Preceding gene: 89055934

Following gene: 89055937

Centisome position: 80.84

GC content: 63.08

Gene sequence:

>1254_bases
ATGCGATATTCCGGGCTTCAAGTGCTCTGGCAGGGCCTGACGGGCAACAAGGGCTGGACGCCCGCCTGGCGCGATCCCGA
TCCGAAGCCCGAGTATGACATCATCATCATCGGCGGCGGCGGTCACGGGCTGGCGACGGCCTATTATCTCGCCAAGGAAC
ATGGCCTGACGAATATCGCCGTGGTCGAGAAGGGCTATCTGGGCGGCGGCAATGTGGGCCGGAACACCACGATTGTGCGG
GCGAACTATGGGCTGCCCGGCAATTCCGAGTTCTACAGCCATTCCCTGAAATTGTGGGAGGGGCTGGAGCAGGACCTCAA
TTACAACGCGATGCATTCCCAGCGTGGCGTGCTCAACCTGTTTCATTCCGATGGCCAGCGCGACGCCTATGCCCGGCGCG
GCAATACGATGATCAATCAGGGCGATGATGCCGTTCTGCTGGACAGGGAGGGCGTGCGCCGCATGGTCCCCTACCTGGAT
TTTGAGCAGACGCGCTTCCCGATCTTCGGTGGTCTCTATCAGGGGCGCGGCGGCACGGCACGGCACGACGCGGTGGCGTG
GGGCTTTGCGCGCGGCGCCGATCAGCGCGGGGTCGATCTGATCCAGAATTGCGAAGTCACCGGCATTGATATTGAGAACG
GGGCCGTGCGCGGCATTCAGACGACCCGGGGCGCGATCCGCGCCAAGAAAGTCGGCATGGTCGTGGCCGGGCGCTCGTCA
CAATTGGCCGCGATGGCCGGGATGCGGTTGCCGATTGAAAGCCACGTTTTGCAGGCCTTCGTGACCGAGGGGCTGAAGCC
GATTATCGACACCGTGATTACCTACGGCATGGGCCATTTCTACATCAGCCAGTCCGACAAGGGCGGGCTGGTCTTTGGCG
GTGATCTGGATTTCTACGCGTCCTATGCGGCGCGCGGCAACCTGCCCATGGCCGAACATGTGGTGGAGGCCGGAATGACC
CTGATGCCGATGATCGGAAAGGCGAAGATGCTGCGGTCCTGGGGCGGGATCATGGACATGTCGTCCGACGGCTCGCCGAT
CCTCGACAAGACCCATATCGACGGGCTCTACGTCAACGGCGGATGGTGTTATGGCGGGTTCAAGGCCGTGCCCGCCTCCG
GCCATTGCTTCGCGCATCTGATGGCCACCGACCGCCCCCACGCCGTCGCCGCCAAACATCGGTTGGATCGCTTCACCACG
GGCCGCGGCCTGATGGATGAAGAGGGCACCGGCAGCCAGCACAATCTGCACTGA

Upstream 100 bases:

>100_bases
TCGTCGCCCGCAGGCCCACCCATGTCGCCCCCAGGCTTTTCCTCCGCCCCTCCCTGGGCTTAGTGTCGGTCTGGCGGCAC
CGCGCAGGATTGGGGACACG

Downstream 100 bases:

>100_bases
GGAGGCGTAGACCATGCACATCCCCTGCCCCCTCTGCGGCGACCGCGACCTGCGGGAATTCACCGTGCGCGGCCACGCCC
TGGGCGCGACACGCCCCGAA

Product: sarcosine oxidase beta subunit family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MRYSGLQVLWQGLTGNKGWTPAWRDPDPKPEYDIIIIGGGGHGLATAYYLAKEHGLTNIAVVEKGYLGGGNVGRNTTIVR
ANYGLPGNSEFYSHSLKLWEGLEQDLNYNAMHSQRGVLNLFHSDGQRDAYARRGNTMINQGDDAVLLDREGVRRMVPYLD
FEQTRFPIFGGLYQGRGGTARHDAVAWGFARGADQRGVDLIQNCEVTGIDIENGAVRGIQTTRGAIRAKKVGMVVAGRSS
QLAAMAGMRLPIESHVLQAFVTEGLKPIIDTVITYGMGHFYISQSDKGGLVFGGDLDFYASYAARGNLPMAEHVVEAGMT
LMPMIGKAKMLRSWGGIMDMSSDGSPILDKTHIDGLYVNGGWCYGGFKAVPASGHCFAHLMATDRPHAVAAKHRLDRFTT
GRGLMDEEGTGSQHNLH

Sequences:

>Translated_417_residues
MRYSGLQVLWQGLTGNKGWTPAWRDPDPKPEYDIIIIGGGGHGLATAYYLAKEHGLTNIAVVEKGYLGGGNVGRNTTIVR
ANYGLPGNSEFYSHSLKLWEGLEQDLNYNAMHSQRGVLNLFHSDGQRDAYARRGNTMINQGDDAVLLDREGVRRMVPYLD
FEQTRFPIFGGLYQGRGGTARHDAVAWGFARGADQRGVDLIQNCEVTGIDIENGAVRGIQTTRGAIRAKKVGMVVAGRSS
QLAAMAGMRLPIESHVLQAFVTEGLKPIIDTVITYGMGHFYISQSDKGGLVFGGDLDFYASYAARGNLPMAEHVVEAGMT
LMPMIGKAKMLRSWGGIMDMSSDGSPILDKTHIDGLYVNGGWCYGGFKAVPASGHCFAHLMATDRPHAVAAKHRLDRFTT
GRGLMDEEGTGSQHNLH
>Mature_417_residues
MRYSGLQVLWQGLTGNKGWTPAWRDPDPKPEYDIIIIGGGGHGLATAYYLAKEHGLTNIAVVEKGYLGGGNVGRNTTIVR
ANYGLPGNSEFYSHSLKLWEGLEQDLNYNAMHSQRGVLNLFHSDGQRDAYARRGNTMINQGDDAVLLDREGVRRMVPYLD
FEQTRFPIFGGLYQGRGGTARHDAVAWGFARGADQRGVDLIQNCEVTGIDIENGAVRGIQTTRGAIRAKKVGMVVAGRSS
QLAAMAGMRLPIESHVLQAFVTEGLKPIIDTVITYGMGHFYISQSDKGGLVFGGDLDFYASYAARGNLPMAEHVVEAGMT
LMPMIGKAKMLRSWGGIMDMSSDGSPILDKTHIDGLYVNGGWCYGGFKAVPASGHCFAHLMATDRPHAVAAKHRLDRFTT
GRGLMDEEGTGSQHNLH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI24797151, Length=351, Percent_Identity=22.5071225071225, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI197927446, Length=383, Percent_Identity=21.4099216710183, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI21361378, Length=383, Percent_Identity=21.4099216710183, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI20130091, Length=389, Percent_Identity=22.107969151671, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 45350; Mature: 45350

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYSGLQVLWQGLTGNKGWTPAWRDPDPKPEYDIIIIGGGGHGLATAYYLAKEHGLTNIA
CCCCCHHHHEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEE
VVEKGYLGGGNVGRNTTIVRANYGLPGNSEFYSHSLKLWEGLEQDLNYNAMHSQRGVLNL
EEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEE
FHSDGQRDAYARRGNTMINQGDDAVLLDREGVRRMVPYLDFEQTRFPIFGGLYQGRGGTA
ECCCCCCCHHHHCCCCEEECCCCEEEECCHHHHHHCCCCCCCCCCCCEECCEECCCCCCC
RHDAVAWGFARGADQRGVDLIQNCEVTGIDIENGAVRGIQTTRGAIRAKKVGMVVAGRSS
CCHHEEEHHHCCCCCCCCHHHHCCCEEEEECCCCCEECCHHHHHHHHHHHEEEEEECCCC
QLAAMAGMRLPIESHVLQAFVTEGLKPIIDTVITYGMGHFYISQSDKGGLVFGGDLDFYA
CCHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEECCCCCCEEECCCHHHHH
SYAARGNLPMAEHVVEAGMTLMPMIGKAKMLRSWGGIMDMSSDGSPILDKTHIDGLYVNG
HHHHCCCCCHHHHHHHCCCCEEHHHHHHHHHHHCCCEEECCCCCCCCCEEECCCEEEEEC
GWCYGGFKAVPASGHCFAHLMATDRPHAVAAKHRLDRFTTGRGLMDEEGTGSQHNLH
EEEECCEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRYSGLQVLWQGLTGNKGWTPAWRDPDPKPEYDIIIIGGGGHGLATAYYLAKEHGLTNIA
CCCCCHHHHEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEE
VVEKGYLGGGNVGRNTTIVRANYGLPGNSEFYSHSLKLWEGLEQDLNYNAMHSQRGVLNL
EEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEE
FHSDGQRDAYARRGNTMINQGDDAVLLDREGVRRMVPYLDFEQTRFPIFGGLYQGRGGTA
ECCCCCCCHHHHCCCCEEECCCCEEEECCHHHHHHCCCCCCCCCCCCEECCEECCCCCCC
RHDAVAWGFARGADQRGVDLIQNCEVTGIDIENGAVRGIQTTRGAIRAKKVGMVVAGRSS
CCHHEEEHHHCCCCCCCCHHHHCCCEEEEECCCCCEECCHHHHHHHHHHHEEEEEECCCC
QLAAMAGMRLPIESHVLQAFVTEGLKPIIDTVITYGMGHFYISQSDKGGLVFGGDLDFYA
CCHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCEEEEECCCCCCEEECCCHHHHH
SYAARGNLPMAEHVVEAGMTLMPMIGKAKMLRSWGGIMDMSSDGSPILDKTHIDGLYVNG
HHHHCCCCCHHHHHHHCCCCEEHHHHHHHHHHHCCCEEECCCCCCCCCEEECCCEEEEEC
GWCYGGFKAVPASGHCFAHLMATDRPHAVAAKHRLDRFTTGRGLMDEEGTGSQHNLH
EEEECCEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]