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The map label for this gene is soxD [H]

Identifier: 89055937

GI number: 89055937

Start: 3491939

End: 3492202

Strand: Direct

Name: soxD [H]

Synonym: Jann_3446

Alternate gene names: 89055937

Gene position: 3491939-3492202 (Clockwise)

Preceding gene: 89055936

Following gene: 89055938

Centisome position: 80.87

GC content: 68.94

Gene sequence:

>264_bases
ATGCACATCCCCTGCCCCCTCTGCGGCGACCGCGACCTGCGGGAATTCACCGTGCGCGGCCACGCCCTGGGCGCGACACG
CCCCGAAGGCGAGGTCTGGTCCGACGACTGGGACGATTTCATCCACAACCGCGAAAACCCGGCAGGCCGCACGCGGGAGC
TTTGGTATCACGGCGGGGGCTGCGGCGCGTGGCTTGTCGTGGACCGCGATACCGTCACCCACGAGGTCTTCGGTGCGCAG
CTGGCGTCGGAGGTGTCGGAATGA

Upstream 100 bases:

>100_bases
GCCGCCAAACATCGGTTGGATCGCTTCACCACGGGCCGCGGCCTGATGGATGAAGAGGGCACCGGCAGCCAGCACAATCT
GCACTGAGGAGGCGTAGACC

Downstream 100 bases:

>100_bases
GGCTTGATCACAAGGGCATCATCGACCGCTCCGCCCCCGTCCGTTTCCATTTCAACGGCGCGCCCTACAGCGGCTTCAAG
GGGGACACCGTCGCCTCTGC

Product: sarcosine oxidase subunit delta, heterotetrameric

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MHIPCPLCGDRDLREFTVRGHALGATRPEGEVWSDDWDDFIHNRENPAGRTRELWYHGGGCGAWLVVDRDTVTHEVFGAQ
LASEVSE

Sequences:

>Translated_87_residues
MHIPCPLCGDRDLREFTVRGHALGATRPEGEVWSDDWDDFIHNRENPAGRTRELWYHGGGCGAWLVVDRDTVTHEVFGAQ
LASEVSE
>Mature_87_residues
MHIPCPLCGDRDLREFTVRGHALGATRPEGEVWSDDWDDFIHNRENPAGRTRELWYHGGGCGAWLVVDRDTVTHEVFGAQ
LASEVSE

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 9805; Mature: 9805

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIPCPLCGDRDLREFTVRGHALGATRPEGEVWSDDWDDFIHNRENPAGRTRELWYHGGG
CCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCC
CGAWLVVDRDTVTHEVFGAQLASEVSE
CEEEEEEECCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHIPCPLCGDRDLREFTVRGHALGATRPEGEVWSDDWDDFIHNRENPAGRTRELWYHGGG
CCCCCCCCCCCCCHHEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCC
CGAWLVVDRDTVTHEVFGAQLASEVSE
CEEEEEEECCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]