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The map label for this gene is ycaD [C]

Identifier: 89055634

GI number: 89055634

Start: 3182091

End: 3183506

Strand: Direct

Name: ycaD [C]

Synonym: Jann_3143

Alternate gene names: 89055634

Gene position: 3182091-3183506 (Clockwise)

Preceding gene: 89055631

Following gene: 89055635

Centisome position: 73.69

GC content: 66.88

Gene sequence:

>1416_bases
ATGGCTCCGGCCCGCCTGCCCCCGATGCACCCGCCGATGCCGGTCCTGGCCCGCGGAAGAGACCCGGGGGGTCTGATCTG
CGTGGACGGATCCCGCACCAAACACCATGTCACCCGGATCAACGCCACACCCCCTTGCACCCCTGCGTCAAGAGGCGCAC
ACCGGGCGCAGTCCAGCGCCCCAAGGCATCGATCCATGCGCCTCCTGATCTCTTTCGCGGCCCTCTTTCTTTCGGTCATC
CTGTTGCAATTGTCGTCCAGCGGCGTCGGGCCGCTCGACGTGCTATCGGGCACGGCGCTGGGGTTCACCAACGGTCAGAT
CGGCCTTCTGGGCTCGGCGCATTTCCTGGGCTTCTTCATCGGCTGCTGGTGGGCCCCGCGCCTGATGGGGTCAGTCGGGC
ATTCCCGCGCATTTGCCGTGTTCACCGCCATGGGGGCGATCGGCCTTCTGGCGCATATGCTGGTGATTAACCCCTATGCC
TGGGCCGCGATGCGCATTTCCACCGGGCTGTGTATTGCGGGCTGTTTCACGGTGATCGAGGCCTGGCTGCAAGCCAAAGC
CACGAACGAGACCCGGGGCCGCACCATGGGCGTCTACCGGATGGTCGACACTGGCGGGCAGCTGGCAGCGCAATTCATGA
TCGGTGTGCTCGCGCCCGCGTCCTACGTCTCCTACAACCTGCTGGCGATCCTGTGTTGTGCGGCGCTTTTGCCCCTGACA
CTGACCCGCCTGAAGCAGCCCGAGAGCCATGGCACACCGCGCCTGCGCCCCCTCATGGCGTGGCGATTGTCGCCCCTGGC
TGTGAGCGGTGTCGCGGTGGCGGGCGTGTCGTCTGCATCGCTGCGGATGACCGGCCCGCTTTATGGCCAGCAGGTGGGGC
TGGAGGCCAGTGACATCGGCCTGTTCCTCGCCGCATTCGTGCTTGGCGGGGCGCTGGCGCAGTGGCCTGCGGGCTATCTG
GCCGACCGCTATGACCGGCGGCGCGTGCTGATCGGGTTCTCCATGGCCTCCATCGTGTCCTGCGCCGTGACCATCGCGGT
GCCGGGCCTGGGGCCCATCGGCATCTTCGGGGCGGCGCTGCTGTTCGGGGCCACGACCTTTCCGATCTATTCCGTCTCTG
CCGCCCATGCCCATGACTGGGCGAGCGACGATCAACGGATCGAGCTGTCGGCCGCGCTGATGTTCTTTTTCGCCTGTGGG
GCCATCGTCGCCCCGCTAACGACCTCGGGCCTGATCAGCGCCTTCGGCCCGGCGGCGCTGTTTTACTTCATCTCCGTCGC
CCACGCCCTGCTGATCGTGTTCAGCCTTGTGCGCATGGGCCGCCGGGCGGCGTCCGGCACCCGCAAACCCTACATCTGGA
TCCCGCGCACGTCGTTTCAGGTCGGCCGCATCTTCCGGCGCGGAAACGACCCATAA

Upstream 100 bases:

>100_bases
CCCCCCCCCGTTCCGCGCGGCCCCGCCCCGATCCGTCATCATGACCGCCCTGACGTCTGGCGCTTAGGTGGTTTTGATAT
CGCCAGTGCCCGCTGCGGTA

Downstream 100 bases:

>100_bases
CGCCCAATCCCGGCCCTAATTCTGACGCCATCCCCTGCCACACAGGCGCCAACTTGAACTGGCCGGGCGTCCCATGACCT
TTCTTCTCCGCACCCTTTGC

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MAPARLPPMHPPMPVLARGRDPGGLICVDGSRTKHHVTRINATPPCTPASRGAHRAQSSAPRHRSMRLLISFAALFLSVI
LLQLSSSGVGPLDVLSGTALGFTNGQIGLLGSAHFLGFFIGCWWAPRLMGSVGHSRAFAVFTAMGAIGLLAHMLVINPYA
WAAMRISTGLCIAGCFTVIEAWLQAKATNETRGRTMGVYRMVDTGGQLAAQFMIGVLAPASYVSYNLLAILCCAALLPLT
LTRLKQPESHGTPRLRPLMAWRLSPLAVSGVAVAGVSSASLRMTGPLYGQQVGLEASDIGLFLAAFVLGGALAQWPAGYL
ADRYDRRRVLIGFSMASIVSCAVTIAVPGLGPIGIFGAALLFGATTFPIYSVSAAHAHDWASDDQRIELSAALMFFFACG
AIVAPLTTSGLISAFGPAALFYFISVAHALLIVFSLVRMGRRAASGTRKPYIWIPRTSFQVGRIFRRGNDP

Sequences:

>Translated_471_residues
MAPARLPPMHPPMPVLARGRDPGGLICVDGSRTKHHVTRINATPPCTPASRGAHRAQSSAPRHRSMRLLISFAALFLSVI
LLQLSSSGVGPLDVLSGTALGFTNGQIGLLGSAHFLGFFIGCWWAPRLMGSVGHSRAFAVFTAMGAIGLLAHMLVINPYA
WAAMRISTGLCIAGCFTVIEAWLQAKATNETRGRTMGVYRMVDTGGQLAAQFMIGVLAPASYVSYNLLAILCCAALLPLT
LTRLKQPESHGTPRLRPLMAWRLSPLAVSGVAVAGVSSASLRMTGPLYGQQVGLEASDIGLFLAAFVLGGALAQWPAGYL
ADRYDRRRVLIGFSMASIVSCAVTIAVPGLGPIGIFGAALLFGATTFPIYSVSAAHAHDWASDDQRIELSAALMFFFACG
AIVAPLTTSGLISAFGPAALFYFISVAHALLIVFSLVRMGRRAASGTRKPYIWIPRTSFQVGRIFRRGNDP
>Mature_470_residues
APARLPPMHPPMPVLARGRDPGGLICVDGSRTKHHVTRINATPPCTPASRGAHRAQSSAPRHRSMRLLISFAALFLSVIL
LQLSSSGVGPLDVLSGTALGFTNGQIGLLGSAHFLGFFIGCWWAPRLMGSVGHSRAFAVFTAMGAIGLLAHMLVINPYAW
AAMRISTGLCIAGCFTVIEAWLQAKATNETRGRTMGVYRMVDTGGQLAAQFMIGVLAPASYVSYNLLAILCCAALLPLTL
TRLKQPESHGTPRLRPLMAWRLSPLAVSGVAVAGVSSASLRMTGPLYGQQVGLEASDIGLFLAAFVLGGALAQWPAGYLA
DRYDRRRVLIGFSMASIVSCAVTIAVPGLGPIGIFGAALLFGATTFPIYSVSAAHAHDWASDDQRIELSAALMFFFACGA
IVAPLTTSGLISAFGPAALFYFISVAHALLIVFSLVRMGRRAASGTRKPYIWIPRTSFQVGRIFRRGNDP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=353, Percent_Identity=27.7620396600567, Blast_Score=126, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 49920; Mature: 49789

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPARLPPMHPPMPVLARGRDPGGLICVDGSRTKHHVTRINATPPCTPASRGAHRAQSSA
CCCCCCCCCCCCCCHHCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHCCC
PRHRSMRLLISFAALFLSVILLQLSSSGVGPLDVLSGTALGFTNGQIGLLGSAHFLGFFI
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEEECCCCCEEEEEHHHHHHHHH
GCWWAPRLMGSVGHSRAFAVFTAMGAIGLLAHMLVINPYAWAAMRISTGLCIAGCFTVIE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHH
AWLQAKATNETRGRTMGVYRMVDTGGQLAAQFMIGVLAPASYVSYNLLAILCCAALLPLT
HHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
LTRLKQPESHGTPRLRPLMAWRLSPLAVSGVAVAGVSSASLRMTGPLYGQQVGLEASDIG
HHHHCCCCCCCCCCHHHHHHHCCCCHHCCCCCEECCCCCCEEEECCCCCHHCCCCHHHHH
LFLAAFVLGGALAQWPAGYLADRYDRRRVLIGFSMASIVSCAVTIAVPGLGPIGIFGAAL
HHHHHHHHCCHHHHCCCHHHHHHHCCCEEEEEECHHHHHHHHHHHEECCCCHHHHHHHHH
LFGATTFPIYSVSAAHAHDWASDDQRIELSAALMFFFACGAIVAPLTTSGLISAFGPAAL
HHCCCCCCEEEECHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYFISVAHALLIVFSLVRMGRRAASGTRKPYIWIPRTSFQVGRIFRRGNDP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCC
>Mature Secondary Structure 
APARLPPMHPPMPVLARGRDPGGLICVDGSRTKHHVTRINATPPCTPASRGAHRAQSSA
CCCCCCCCCCCCCHHCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCHHHHHCCC
PRHRSMRLLISFAALFLSVILLQLSSSGVGPLDVLSGTALGFTNGQIGLLGSAHFLGFFI
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEEECCCCCEEEEEHHHHHHHHH
GCWWAPRLMGSVGHSRAFAVFTAMGAIGLLAHMLVINPYAWAAMRISTGLCIAGCFTVIE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHH
AWLQAKATNETRGRTMGVYRMVDTGGQLAAQFMIGVLAPASYVSYNLLAILCCAALLPLT
HHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
LTRLKQPESHGTPRLRPLMAWRLSPLAVSGVAVAGVSSASLRMTGPLYGQQVGLEASDIG
HHHHCCCCCCCCCCHHHHHHHCCCCHHCCCCCEECCCCCCEEEECCCCCHHCCCCHHHHH
LFLAAFVLGGALAQWPAGYLADRYDRRRVLIGFSMASIVSCAVTIAVPGLGPIGIFGAAL
HHHHHHHHCCHHHHCCCHHHHHHHCCCEEEEEECHHHHHHHHHHHEECCCCHHHHHHHHH
LFGATTFPIYSVSAAHAHDWASDDQRIELSAALMFFFACGAIVAPLTTSGLISAFGPAAL
HHCCCCCCEEEECHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYFISVAHALLIVFSLVRMGRRAASGTRKPYIWIPRTSFQVGRIFRRGNDP
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA