| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89055467
Identifier: 89055467
GI number: 89055467
Start: 2993846
End: 2994817
Strand: Direct
Name: 89055467
Synonym: Jann_2976
Alternate gene names: NA
Gene position: 2993846-2994817 (Clockwise)
Preceding gene: 89055466
Following gene: 89055468
Centisome position: 69.33
GC content: 58.95
Gene sequence:
>972_bases ATGACACATCACGACGATACGGCGACGGCGGCGCGATCTGCGCAAGACGTCTTTCAAGCGTTCCTCGACCACACATCCAA ACTTGTCCTGACCAATGATGCCAAGGGGTACTGCAATCACATCGTCCTGCCTTTCGTGTTTCGAACGGGCGCTGGTGAGG TTGTGATCGAAACCGAAGATGACCTCCTGATCGACACCATTGAGATTTGCGACTGGATGAAGTCCCACGGGATCACGGAT TACCACCGGATCTGCCGCAGCGCGCAATACCTGCCCAATGGCGACATCGACGGCGTCCACATCACCTATGCGTTGAACAA TGCAGTCGCAGTCATGCCGCCCTATGCCAACCGCAGCATTTTGCGATGCGTTGACGGGACGTGGAAGGTGGTGCTGTCCG AGCATGAAATCGCCAACCCGCTGATGCCGGGAAAGGACACAAGCGCCGCGCCCGGCGTTTTCTCGGACGATTGGCCCGGG GCGGGTGACGACTTCGACGGGGATCCGGCCACCGCGTTGTCCGTCTATCAGGCAACGATCTCGCGCATGGACGACATGTG CAATGCACGTGACTTCGCGGGCTGGATCGATTGCTTCGTGATGCCCCACGCCATTCATTACGATCACACCGATCACTGGG TGGAGACGCCGGAGGAGGCGCGCGCGTTTTTCGATATGCTGGTGGGCTCGATGGAAACGGCGCAGGCGGATGTCATCGTG CGGACCGCCAATTTCGCCGCCTTCGTCAGCAAAACCCGGCTTCTGGGCTACCACGACACCAGCATGACCAAGAACGAAGC GCTCTGCTTTGGTCCGGTCAAAAGCCGAATGATCCTAGAACACTCCGACGGCGTCTGGCGGTGCGCCAACGTCACGAATT CCCTGGCCAATGATCGGTTTGCCGAAGGCGCGTTTGCGCCCACGACCCGGCTGCCGACGTTGCGCCAAATAAACAAGAGG ATGCAAGAATGA
Upstream 100 bases:
>100_bases TGTGGCCGCTGGCATGGGATCTGCCACGATCCTGGAGCGGGTGTAGCCCCGCCGCCTCGGCACGCCCCGCCCCCCGCACG GCAAGAGAAAGGAGGACCGC
Downstream 100 bases:
>100_bases CCGATTTCACCATGCAGACCGACGCCGATGGCGTTGCTGTCATCACCTGGGACGTGCCCGGAAAATCCATGAATGTGCTG AACCGGGATGCCTTTGATGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 323; Mature: 322
Protein sequence:
>323_residues MTHHDDTATAARSAQDVFQAFLDHTSKLVLTNDAKGYCNHIVLPFVFRTGAGEVVIETEDDLLIDTIEICDWMKSHGITD YHRICRSAQYLPNGDIDGVHITYALNNAVAVMPPYANRSILRCVDGTWKVVLSEHEIANPLMPGKDTSAAPGVFSDDWPG AGDDFDGDPATALSVYQATISRMDDMCNARDFAGWIDCFVMPHAIHYDHTDHWVETPEEARAFFDMLVGSMETAQADVIV RTANFAAFVSKTRLLGYHDTSMTKNEALCFGPVKSRMILEHSDGVWRCANVTNSLANDRFAEGAFAPTTRLPTLRQINKR MQE
Sequences:
>Translated_323_residues MTHHDDTATAARSAQDVFQAFLDHTSKLVLTNDAKGYCNHIVLPFVFRTGAGEVVIETEDDLLIDTIEICDWMKSHGITD YHRICRSAQYLPNGDIDGVHITYALNNAVAVMPPYANRSILRCVDGTWKVVLSEHEIANPLMPGKDTSAAPGVFSDDWPG AGDDFDGDPATALSVYQATISRMDDMCNARDFAGWIDCFVMPHAIHYDHTDHWVETPEEARAFFDMLVGSMETAQADVIV RTANFAAFVSKTRLLGYHDTSMTKNEALCFGPVKSRMILEHSDGVWRCANVTNSLANDRFAEGAFAPTTRLPTLRQINKR MQE >Mature_322_residues THHDDTATAARSAQDVFQAFLDHTSKLVLTNDAKGYCNHIVLPFVFRTGAGEVVIETEDDLLIDTIEICDWMKSHGITDY HRICRSAQYLPNGDIDGVHITYALNNAVAVMPPYANRSILRCVDGTWKVVLSEHEIANPLMPGKDTSAAPGVFSDDWPGA GDDFDGDPATALSVYQATISRMDDMCNARDFAGWIDCFVMPHAIHYDHTDHWVETPEEARAFFDMLVGSMETAQADVIVR TANFAAFVSKTRLLGYHDTSMTKNEALCFGPVKSRMILEHSDGVWRCANVTNSLANDRFAEGAFAPTTRLPTLRQINKRM QE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35909; Mature: 35777
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHHDDTATAARSAQDVFQAFLDHTSKLVLTNDAKGYCNHIVLPFVFRTGAGEVVIETED CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHEEHEEHHEECCCCCEEEECCC DLLIDTIEICDWMKSHGITDYHRICRSAQYLPNGDIDGVHITYALNNAVAVMPPYANRSI CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEECCCCCCHH LRCVDGTWKVVLSEHEIANPLMPGKDTSAAPGVFSDDWPGAGDDFDGDPATALSVYQATI EEECCCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH SRMDDMCNARDFAGWIDCFVMPHAIHYDHTDHWVETPEEARAFFDMLVGSMETAQADVIV HHHHHHHCHHHHHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEE RTANFAAFVSKTRLLGYHDTSMTKNEALCFGPVKSRMILEHSDGVWRCANVTNSLANDRF EECHHHHHHHHHHHEEECCCCCCCCCCEEECCCCCCEEEECCCCCEEEHHHHHHHHCCHH AEGAFAPTTRLPTLRQINKRMQE CCCCCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure THHDDTATAARSAQDVFQAFLDHTSKLVLTNDAKGYCNHIVLPFVFRTGAGEVVIETED CCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHEEHEEHHEECCCCCEEEECCC DLLIDTIEICDWMKSHGITDYHRICRSAQYLPNGDIDGVHITYALNNAVAVMPPYANRSI CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEECCCCCCHH LRCVDGTWKVVLSEHEIANPLMPGKDTSAAPGVFSDDWPGAGDDFDGDPATALSVYQATI EEECCCCEEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH SRMDDMCNARDFAGWIDCFVMPHAIHYDHTDHWVETPEEARAFFDMLVGSMETAQADVIV HHHHHHHCHHHHHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEE RTANFAAFVSKTRLLGYHDTSMTKNEALCFGPVKSRMILEHSDGVWRCANVTNSLANDRF EECHHHHHHHHHHHEEECCCCCCCCCCEEECCCCCCEEEECCCCCEEEHHHHHHHHCCHH AEGAFAPTTRLPTLRQINKRMQE CCCCCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA